Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G201900 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 4.7e-294 1013.8 527 100.0
Glyma.06G204000 Glycine max HOM05D006637 ORTHO05D001736 1.3e-147 527.3 513 60.6
Glyma.04G162200 Glycine max HOM05D006637 ORTHO05D001736 1.6e-132 477.2 671 46.8
Medtr3g025960 Medicago truncatula HOM05D006637 ORTHO05D001736 2.9e-62 243.8 558 37.3
Ca_14358_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 1.4e-56 224.9 319 50.2
Ca_21771_v3 Cicer arietinum L. HOM05D006637 ORTHO05D001736 9.2e-48 195.7 395 41.0
TPR.G12192 Trifolium pratense HOM05D006637 ORTHO05D001736 1.3e-46 191.8 270 50.0
Lj4g0016086 Lotus japonicus HOM05D006637 ORTHO05D001736 3.8e-46 190.3 515 37.1
Psat5g203560 Pisum sativum HOM05D006637 ORTHO05D001736 6.6e-46 189.5 532 36.5
TPR.G2044 Trifolium pratense HOM05D006637 ORTHO05D001736 1.0e-35 155.6 420 36.9
Medtr4g109570 Medicago truncatula HOM05D006637 ORTHO05D001736 6.4e-33 146.4 467 33.8
Glyma.05G020700 Glycine max HOM05D006637 ORTHO05D001736 3.0e-30 137.5 330 37.0
Lalb_Chr13g0302841 Lupinus albus HOM05D006637 ORTHO05D001736 3.9e-30 137.1 378 35.4
Psat4g068920 Pisum sativum HOM05D006637 ORTHO05D001736 1.1e-27 129.0 325 36.0
VMungo1215G2016 Vigna mungo HOM05D006637 ORTHO05D001736 6.8e-27 126.3 241 40.2
Atru.chr9.567 Acer truncatum HOM05D006637 ORTHO05D001736 1.5e-26 125.2 333 34.2
Lalb_Chr07g0178311 Lupinus albus HOM05D006637 ORTHO05D001736 9.8e-26 122.5 444 34.0
Ciclev10023416m.g Citrus clementina HOM05D006637 ORTHO05D001736 2.9e-25 120.9 354 33.6
Glyma.17G078600 Glycine max HOM05D006637 ORTHO05D001736 4.9e-25 120.2 288 38.9
Thecc.03G102400 Theobroma cacao HOM05D006637 ORTHO05D001736 4.9e-25 120.2 337 36.8
Phvul.003G184500 Phaseolus vulgaris HOM05D006637 ORTHO05D001736 3.2e-24 117.5 269 37.9
Cpa.g.sc10.158 Carica papaya HOM05D006637 ORTHO05D001736 7.1e-24 116.3 337 36.8
CiPaw.11G054000 Carya illinoinensis HOM05D006637 ORTHO05D001736 7.1e-24 116.3 316 34.5
MD06G1225400 Malus domestica HOM05D006637 ORTHO05D001736 1.2e-23 115.5 277 37.9
MD14G1212300 Malus domestica HOM05D006637 ORTHO05D001736 1.2e-23 115.5 355 35.8
FAN08G0389 Fragaria x ananassa HOM05D006637 ORTHO05D001736 3.9e-22 110.5 312 33.7
FAN13G0480 Fragaria x ananassa HOM05D006637 ORTHO05D001736 5.1e-22 110.2 311 34.1
Duzib068G0311 Durio zibethinus HOM05D006637 ORTHO05D001736 2.5e-21 107.8 344 34.9
FvH4_5g13780 Fragaria vesca HOM05D006637 ORTHO05D001736 2.5e-21 107.8 331 32.9
CsaV3_1G002960 Cucumis sativus L. HOM05D006637 ORTHO05D001736 3.3e-21 107.5 287 34.8
TWI81G0402 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 4.7e-20 103.6 321 34.6
PGR083G0945 Punica granatum HOM05D006637 ORTHO05D001736 6.2e-20 103.2 388 31.7
Manes.06G084300 Manihot esculenta HOM05D006637 ORTHO05D001736 8.1e-20 102.8 274 34.3
Potri.015G057200 Populus trichocarpa HOM05D006637 ORTHO05D001736 8.1e-20 102.8 367 32.7
MELO3C017227.2 Cucumis melo HOM05D006637 ORTHO05D001736 1.4e-19 102.1 346 31.8
RcHm_v2.0_Chr7g0183151 Rosa chinensis HOM05D006637 ORTHO05D001736 1.8e-19 101.7 375 32.0
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 1.8e-19 101.7 323 31.9
FAN18G2922 Fragaria x ananassa HOM05D006637 ORTHO05D001736 2.3e-19 101.3 405 28.9
Cfa019342 Carpinus fangiana HOM05D000824 ORTHO05D003555 3.1e-19 100.9 304 34.5
Sed0021860 Sechium edule HOM05D006637 ORTHO05D001736 5.2e-19 100.1 252 38.1
Manes.14G086000 Manihot esculenta HOM05D006637 ORTHO05D001736 8.9e-19 99.4 311 31.2
Sed0008450 Sechium edule HOM05D006637 ORTHO05D001736 8.9e-19 99.4 338 32.8
TWI15G0882 Tripterygium wilfordii HOM05D006637 ORTHO05D001736 1.2e-18 99.0 361 34.1
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 2.6e-18 97.8 336 32.4
Sabra12G0044700 Salix brachista HOM05D006637 ORTHO05D001736 1.3e-17 95.5 314 34.1
Duzib205G1030 Durio zibethinus HOM05D006637 ORTHO05D001736 1.7e-17 95.1 282 36.2
Prupe.5G205600 Prunus persica HOM05D006637 ORTHO05D001736 1.7e-17 95.1 436 28.7
C02p31780 Brassica napus HOM05D006637 ORTHO05D001736 2.2e-17 94.7 257 32.3
QL10p019649 Quercus lobata HOM05D006637 ORTHO05D001736 2.9e-17 94.4 206 37.9
BcaC03g15494 Brassica carinata HOM05D006637 ORTHO05D001736 6.4e-17 93.2 257 32.3
BolC2t09205H Brassica oleracea HOM05D006637 ORTHO05D001736 6.4e-17 93.2 257 32.3
Haze_07733 Corylus avellana HOM05D006637 ORTHO05D001736 8.4e-17 92.8 229 36.7
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 1.9e-16 91.7 353 31.7
Nn3g17457 Nelumbo nucifera HOM05D003787 ORTHO05D001736 7.1e-16 89.7 344 31.7
Potri.012G061700 Populus trichocarpa HOM05D006637 ORTHO05D001736 1.6e-15 88.6 251 35.5
Aa31LG4G4510 Aethionema arabicum HOM05D006637 ORTHO05D001736 4.6e-15 87.0 270 33.7
Aqoxy3G03685 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 1.3e-14 85.5 211 40.3
A02p19190 Brassica napus HOM05D006637 ORTHO05D001736 1.3e-14 85.5 261 33.3
ClCG06G015610 Citrullus lanatus HOM05D006637 ORTHO05D001736 1.3e-14 85.5 439 28.2
BraA07t30588Z Brassica rapa HOM05D006637 ORTHO05D001736 2.3e-14 84.7 266 33.8
COL.COLO4_06852 Corchorus olitorius HOM05D006637 ORTHO05D001736 3.0e-14 84.3 275 32.4
BcaB05g24843 Brassica carinata HOM05D006637 ORTHO05D001736 8.6e-14 82.8 257 31.9
BolC6t38463H Brassica oleracea HOM05D006637 ORTHO05D001736 1.1e-13 82.4 265 33.2
BraA02t06967Z Brassica rapa HOM05D006637 ORTHO05D001736 1.1e-13 82.4 260 33.1
Cc00_g04710 Coffea canephora HOM05D006637 ORTHO05D001736 2.5e-13 81.3 252 34.1
Dinv22776 Davidia involucrata HOM05D006637 ORTHO05D001736 3.3e-13 80.9 259 32.0
BcaC03g15490 Brassica carinata HOM05D006637 ORTHO05D001736 7.3e-13 79.7 191 35.1
BcaC08g45599 Brassica carinata HOM05D006637 ORTHO05D001736 7.3e-13 79.7 265 32.1
Gorai.008G199400 Gossypium raimondii HOM05D006637 ORTHO05D001736 7.3e-13 79.7 260 32.3
Gohir.D12G186000 Gossypium hirsutum HOM05D006637 ORTHO05D001736 1.6e-12 78.6 257 31.9
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 1.6e-12 78.6 265 29.8
A07p29500 Brassica napus HOM05D000311 ORTHO05D000183 2.1e-12 78.2 207 36.7
Gohir.A12G182900 Gossypium hirsutum HOM05D006637 ORTHO05D001736 2.1e-12 78.2 257 31.9
Sp5g29400 Schrenkiella parvula HOM05D006637 ORTHO05D001736 3.6e-12 77.4 331 31.1
ECA238G2630 Erigeron canadensis HOM05D003787 ORTHO05D001736 6.2e-12 76.6 240 31.2
Rhsim12G0148600 Rhododendron simsii HOM05D006637 ORTHO05D001736 6.2e-12 76.6 192 38.0
PSO017G7320 Papaver somniferum HOM05D006637 ORTHO05D001736 8.1e-12 76.3 201 35.3
Actinidia04823 Actinidia chinensis HOM05D006637 ORTHO05D001736 1.1e-11 75.9 265 33.6
PSO478G0913 Papaver somniferum HOM05D006637 ORTHO05D001736 1.4e-11 75.5 201 35.3
THA.LOC104808038 Tarenaya hassleriana HOM05D006637 ORTHO05D001736 1.4e-11 75.5 253 31.2
C06p33490 Brassica napus HOM05D000311 ORTHO05D000183 3.1e-11 74.3 206 35.9
Gohir.D11G036700 Gossypium hirsutum HOM05D006637 ORTHO05D001736 8.9e-11 72.8 265 31.3
TAR622G0628 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.2e-10 72.4 320 29.4
BraA07t31550Z Brassica rapa HOM05D006637 ORTHO05D001736 1.5e-10 72.0 276 30.8
CARHR067480 Cardamine hirsuta HOM05D006637 ORTHO05D001736 2.0e-10 71.6 347 27.7
Gorai.007G039500 Gossypium raimondii HOM05D006637 ORTHO05D001736 2.6e-10 71.2 265 31.3
Carub.0002s2101 Capsella rubella HOM05D006637 ORTHO05D001736 3.4e-10 70.9 329 29.8
ATR0177G031 Amborella trichopoda HOM05D003787 ORTHO05D001736 4.4e-10 70.5 251 31.5
AT1G74220 Arabidopsis thaliana HOM05D006637 ORTHO05D001736 4.4e-10 70.5 277 33.2
A07p40060 Brassica napus HOM05D006637 ORTHO05D001736 7.6e-10 69.7 268 31.0
PSO478G3423 Papaver somniferum HOM05D006637 ORTHO05D001736 7.6e-10 69.7 128 42.2
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 7.6e-10 69.7 224 33.5
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 7.6e-10 69.7 299 29.8
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 9.9e-10 69.3 272 31.2
Lj5C102T22 Lonicera japonica HOM05D006637 ORTHO05D001736 1.3e-09 68.9 240 31.2
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 2.2e-09 68.2 182 34.1
HPP92_011441 Vanilla planifolia HOM05D003787 ORTHO05D001736 2.2e-09 68.2 286 29.7
Sc12g0007280 Simmondsia chinensis HOM05D006637 ORTHO05D001736 2.9e-09 67.8 347 29.4
Gohir.D03G096675 Gossypium hirsutum HOM05D006637 ORTHO05D001736 3.8e-09 67.4 215 34.9
Gohir.A03G070200 Gossypium hirsutum HOM05D006637 ORTHO05D001736 4.9e-09 67.0 223 34.1
vmacro16493 Vaccinium macrocarpon HOM05D006637 ORTHO05D001736 1.1e-08 65.9 192 34.9
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 1.9e-08 65.1 256 30.5
Dinv17418 Davidia involucrata HOM05D006637 ORTHO05D001736 1.9e-08 65.1 342 30.4
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.4e-08 64.7 331 27.8
AUR62008536 Chenopodium quinoa HOM05D006637 ORTHO05D001736 3.2e-08 64.3 218 33.9
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 4.2e-08 63.9 336 30.7
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 4.2e-08 63.9 251 29.5
Aqoxy3G00509 Aquilegia oxysepala HOM05D006637 ORTHO05D001736 5.4e-08 63.5 261 34.5
C06p48410 Brassica napus HOM05D006637 ORTHO05D001736 7.1e-08 63.2 275 29.8
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 7.1e-08 63.2 372 28.0
MBI19_g14007_MAGBIO Magnolia biondii HOM05D006637 ORTHO05D001736 7.1e-08 63.2 235 30.2
AL2G34100 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 9.3e-08 62.8 350 29.4
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 1.2e-07 62.4 108 42.6
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.6e-07 62.0 321 27.4
BolC6t39870H Brassica oleracea HOM05D006637 ORTHO05D001736 1.6e-07 62.0 99 45.5
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.6e-07 62.0 204 33.8
Thhalv10018880m.g Eutrema salsugineum HOM05D006637 ORTHO05D001736 1.6e-07 62.0 289 29.4
PSO017G1216 Papaver somniferum HOM05D006637 ORTHO05D001736 1.6e-07 62.0 258 32.2
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 1.6e-07 62.0 181 35.9
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.1e-07 61.6 80 48.8
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.1e-07 61.6 80 48.8
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 2.7e-07 61.2 110 40.9
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 2.7e-07 61.2 177 36.2
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 2.7e-07 61.2 263 30.8
Manes.02G055200 Manihot esculenta HOM05D003787 ORTHO05D001736 2.7e-07 61.2 258 31.0
RcHm_v2.0_Chr4g0438271 Rosa chinensis HOM05D003787 ORTHO05D001736 2.7e-07 61.2 228 31.1
AUR62021555 Chenopodium quinoa HOM05D006637 ORTHO05D001736 3.5e-07 60.8 219 34.2
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 7.8e-07 59.7 199 32.7
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 7.8e-07 59.7 183 32.8
ECA247G1160 Erigeron canadensis HOM05D036494 ORTHO05D001736 7.8e-07 59.7 87 46.0
PGSC0003DMG400024635 Solanum tuberosum HOM05D006637 ORTHO05D001736 7.8e-07 59.7 348 28.2
CAN.G1228.21 Capsicum annuum HOM05D006637 ORTHO05D001736 1.3e-06 58.9 333 28.2
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.7e-06 58.5 344 28.2
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 2.3e-06 58.2 182 32.4
Sopen03g034130 Solanum pennellii HOM05D006637 ORTHO05D001736 2.3e-06 58.2 278 30.9
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.3e-06 58.2 239 28.5
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 3.0e-06 57.8 105 40.0
CDE05G3272 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 3.0e-06 57.8 307 26.4
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 3.0e-06 57.8 271 31.0
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 3.9e-06 57.4 263 32.3
Gohir.A11G033350 Gossypium hirsutum HOM05D006637 ORTHO05D001736 3.9e-06 57.4 72 45.8
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 5.1e-06 57.0 80 45.0
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 5.1e-06 57.0 238 29.0
BcaC08g46854 Brassica carinata HOM05D006637 ORTHO05D001736 5.1e-06 57.0 268 32.5
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 5.1e-06 57.0 182 33.0
CDE02G2765 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 6.6e-06 56.6 333 26.1
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 6.6e-06 56.6 193 32.6


User provided reference genes

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