Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 8.0e-126 453.8 226 100.0
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 7.0e-114 414.1 222 91.0
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 6.4e-107 391.0 224 83.5
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 7.8e-97 357.5 222 75.2
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.3e-96 355.9 222 76.6
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 7.6e-92 340.9 227 74.9
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 4.9e-91 338.2 222 73.9
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 2.3e-88 329.3 226 71.7
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.1e-87 327.0 166 90.4
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 1.9e-87 326.2 211 72.5
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.6e-78 295.4 221 67.4
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.8e-77 293.1 222 61.3
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 1.8e-77 293.1 223 61.9
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 3.1e-77 292.4 234 59.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 4.0e-77 292.0 222 63.1
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 9.0e-77 290.8 224 61.2
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 4.4e-76 288.5 224 58.9
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 2.2e-75 286.2 215 61.4
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 6.4e-75 284.6 216 64.4
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 1.1e-74 283.9 215 60.9
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.4e-74 282.7 217 61.8
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.2e-74 282.3 210 62.9
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 4.2e-74 282.0 228 57.9
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.2e-74 282.0 213 60.1
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 7.1e-74 281.2 208 61.1
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 6.0e-73 278.1 215 62.8
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 7.9e-73 277.7 224 59.4
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.3e-72 276.9 223 58.7
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.3e-72 276.9 216 59.7
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.7e-72 276.6 250 52.4
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.3e-72 276.2 208 60.1
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 2.3e-72 276.2 223 57.0
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 5.1e-72 275.0 226 57.1
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 5.1e-72 275.0 213 58.7
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 5.1e-72 275.0 213 58.7
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 6.6e-72 274.6 214 58.9
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.1e-71 273.9 226 58.4
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.1e-71 273.9 191 63.4
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.1e-71 273.9 200 62.0
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.3e-71 271.9 213 57.3
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 4.3e-71 271.9 199 64.3
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 4.3e-71 271.9 222 59.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 7.3e-71 271.2 223 56.5
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.1e-69 267.3 207 58.0
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.4e-69 266.9 216 56.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 2.4e-69 266.2 219 55.7
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 6.9e-69 264.6 216 55.6
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 9.0e-69 264.2 201 60.2
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.5e-68 263.5 212 58.0
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 2.0e-68 263.1 212 58.0
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.6e-68 262.7 218 58.3
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 7.6e-68 261.2 201 59.2
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.8e-67 258.8 212 54.7
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 9.3e-66 254.2 208 54.8
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.1e-65 253.1 210 55.7
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 4.6e-65 251.9 197 56.9
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.6e-65 251.9 228 54.4
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 6.0e-65 251.5 201 55.7
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 6.0e-65 251.5 201 55.7
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.0e-65 251.5 213 56.3
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.8e-64 250.0 201 55.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 5.1e-64 248.4 208 53.4
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 5.1e-64 248.4 212 52.4
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 6.7e-64 248.1 205 54.1
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 8.7e-64 247.7 215 52.1
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 4.3e-63 245.4 200 53.5
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 5.6e-63 245.0 221 52.5
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.7e-62 242.3 220 50.0
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.7e-62 242.3 216 51.4
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 4.8e-62 241.9 224 51.3
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.8e-62 241.9 212 53.8
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 6.2e-62 241.5 218 51.8
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-61 240.7 215 51.2
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 6.9e-61 238.0 222 48.2
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 9.0e-61 237.7 211 53.6
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.5e-60 236.9 215 53.5
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 2.0e-60 236.5 215 52.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.4e-60 235.7 223 48.9
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 3.4e-60 235.7 223 48.9
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.5e-60 235.3 201 55.7
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 5.8e-60 235.0 213 51.6
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.0e-59 234.2 239 50.2
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-59 233.8 215 49.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.3e-59 233.8 215 50.2
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.3e-59 233.8 218 51.4
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.3e-59 233.8 218 53.2
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.7e-59 233.4 205 51.2
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 2.2e-59 233.0 216 52.8
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 4.9e-59 231.9 225 50.7
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 6.5e-59 231.5 210 51.0
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-58 230.3 231 48.9
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.4e-58 230.3 195 57.4
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.9e-58 229.9 216 50.0
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.9e-58 229.9 216 50.0
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 2.5e-58 229.6 216 49.5
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 5.5e-58 228.4 200 53.5
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 9.3e-58 227.6 195 49.7
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 9.3e-58 227.6 210 50.5
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.3e-56 223.8 232 48.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.9e-55 219.9 241 45.2
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 7.4e-55 218.0 190 52.6
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 1.3e-54 217.2 190 51.6
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 1.3e-54 217.2 225 46.7
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.6e-54 216.9 207 51.2
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.8e-54 216.1 237 49.4
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.4e-53 213.8 164 60.4
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 5.3e-53 211.8 186 57.5
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 9.0e-53 211.1 192 49.0
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 1.5e-52 210.3 203 48.8
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 2.0e-52 209.9 189 49.7
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 2.6e-52 209.5 174 55.2
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.8e-52 208.4 211 55.0
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 7.6e-52 208.0 176 52.8
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.0e-51 205.3 209 55.0
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 8.4e-51 204.5 201 47.8
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 3.2e-50 202.6 227 45.4
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 9.3e-50 201.1 108 81.5
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 9.3e-50 201.1 206 49.5
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.3e-48 197.2 185 47.0
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 1.1e-47 194.1 133 65.4
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 9.7e-47 191.0 242 40.5
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 2.8e-46 189.5 199 47.7
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 2.6e-44 183.0 191 46.6
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.1e-42 177.6 257 43.2
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 6.1e-41 171.8 128 53.9
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.4e-40 170.6 195 41.0
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 2.3e-40 169.9 108 65.7
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 2.5e-39 166.4 246 38.6
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.0e-35 154.5 139 56.8
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.7e-35 153.7 220 39.5
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 3.1e-29 132.9 166 44.0
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.0e-27 127.9 89 57.3
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.8e-22 109.0 115 50.4
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 5.3e-21 105.5 71 59.2
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 8.5e-19 98.2 62 61.3
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 8.5e-19 98.2 95 52.6
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.1e-18 97.8 58 69.0
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.9e-18 97.1 92 54.3
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.7e-17 93.2 56 67.9
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.6e-17 92.8 114 42.1
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 3.1e-13 79.7 53 60.4
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.0e-11 74.7 80 48.8
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-10 70.9 64 43.8
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.5e-10 70.9 123 37.4
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.2e-10 69.7 86 44.2
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 3.2e-10 69.7 162 29.6
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 9.4e-10 68.2 121 33.1
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.1e-09 67.0 69 40.6
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.7e-09 65.9 49 53.1
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.4e-08 64.3 63 46.0
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.3e-08 63.5 45 60.0
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.0e-08 63.2 77 42.9
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.4e-07 59.3 52 57.7
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.3e-06 57.8 46 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4109 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.8e-06 56.6 118 30.5
TPR.G7694 Trifolium pratense HOM05D004918 ORTHO05D005706 4.9e-06 55.8 38 65.8


User provided reference genes

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