Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 0.0e+00 1834.7 919 100.0
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 0.0e+00 1370.5 912 77.3
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 0.0e+00 1312.4 917 74.2
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 0.0e+00 1260.4 920 71.3
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 0.0e+00 1211.1 924 70.7
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 0.0e+00 1203.0 921 68.5
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 0.0e+00 1199.5 920 68.7
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 0.0e+00 1198.7 919 68.8
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 0.0e+00 1194.5 915 67.8
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 0.0e+00 1182.5 932 67.0
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 5.6e-295 1017.7 936 58.1
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 1.2e-289 1000.0 934 60.2
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 6.7e-288 994.2 934 60.0
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 6.9e-285 984.2 926 56.9
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-283 979.2 927 57.0
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.6e-281 973.0 912 57.0
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 4.6e-281 971.5 922 57.8
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 9.1e-277 957.2 930 55.6
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.7e-275 953.0 921 56.4
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 3.6e-273 945.3 939 55.1
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 2.3e-272 942.6 939 55.2
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 2.6e-271 939.1 940 55.0
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.7e-270 936.4 932 55.7
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.8e-270 935.6 941 54.8
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 6.3e-270 934.5 932 55.0
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 3.1e-269 932.2 936 55.3
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 9.1e-269 930.6 933 54.8
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 3.2e-266 922.2 927 54.5
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 3.9e-264 915.2 930 55.3
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 5.2e-264 914.8 945 53.8
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.7e-262 908.7 940 53.9
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 8.5e-259 897.5 927 53.9
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.5e-258 896.7 820 59.4
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 9.4e-258 894.0 931 54.1
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.1e-253 880.6 929 53.2
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 3.5e-252 875.5 1000 50.6
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 2.5e-250 869.4 927 52.4
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 5.2e-248 861.7 932 52.4
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 5.2e-248 861.7 933 50.9
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 2.0e-247 859.8 900 53.8
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 2.4e-245 852.8 945 50.5
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 5.0e-243 845.1 944 50.3
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 5.5e-242 841.6 935 50.3
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 3.6e-241 839.0 940 51.2
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 6.8e-240 834.7 919 50.6
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 4.4e-239 832.0 937 50.5
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 7.5e-239 831.2 865 54.9
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.3e-238 830.5 927 48.4
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.4e-237 827.0 924 48.8
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 7.0e-237 824.7 930 48.3
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 9.2e-237 824.3 930 48.4
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 1.6e-236 823.5 944 49.6
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 5.0e-235 818.5 736 59.5
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 5.7e-231 805.1 944 48.4
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 2.2e-230 803.1 943 47.7
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 3.7e-230 802.4 957 48.2
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.8e-229 800.0 933 47.4
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 2.0e-228 796.6 928 48.0
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.7e-227 793.5 935 46.8
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 3.0e-227 792.7 936 48.3
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 3.3e-226 789.3 920 48.9
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.4e-224 783.9 916 46.7
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 1.5e-223 780.4 918 46.8
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 1.7e-222 776.9 698 59.3
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 9.2e-221 771.2 934 46.3
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 1.5e-218 763.8 915 46.0
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 4.3e-218 762.3 927 45.8
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 4.3e-218 762.3 947 47.6
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 3.6e-217 759.2 921 46.9
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 9.9e-215 751.1 934 45.7
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 1.4e-213 747.3 934 44.8
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 5.4e-213 745.3 720 55.8
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 9.2e-213 744.6 933 46.2
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 4.6e-212 742.3 920 46.0
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 1.2e-209 734.2 944 46.3
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 6.2e-209 731.9 923 47.5
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 2.6e-207 726.5 962 44.9
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 3.5e-204 716.1 941 45.3
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 6.0e-204 715.3 1077 41.8
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.0e-203 714.5 758 50.8
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 7.3e-202 708.4 935 45.3
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.8e-198 696.0 759 50.6
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.1e-197 694.5 933 46.1
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 1.3e-195 687.6 772 49.0
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.1e-194 684.5 938 44.7
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 2.5e-194 683.3 928 42.6
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 9.0e-192 674.9 932 44.0
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 6.4e-190 668.7 468 75.0
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.2e-188 664.5 925 43.4
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 6.7e-187 658.7 922 42.8
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.5e-186 656.8 850 44.9
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 1.7e-182 644.0 922 42.5
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 1.1e-181 641.3 469 72.1
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 3.9e-179 632.9 498 64.3
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 4.2e-173 612.8 725 47.9
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 1.0e-171 608.2 415 74.0
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 5.1e-171 605.9 933 40.2
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.5e-170 604.4 695 47.9
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 4.5e-167 592.8 656 51.4
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.8e-163 578.6 910 41.6
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.7e-162 575.9 574 55.2
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.7e-153 546.6 454 61.2
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 8.2e-145 518.8 482 55.4
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.2e-140 505.0 932 38.0
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 3.3e-138 496.9 979 34.3
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.3e-123 447.6 522 47.9
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.6e-122 444.1 924 33.0
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.3e-109 399.4 486 49.4
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-106 392.1 483 47.2
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 3.0e-102 377.5 492 43.1
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.6e-100 371.7 395 52.7
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 9.2e-96 355.9 363 52.3
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 3.6e-92 344.0 330 54.8
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 1.7e-89 335.1 797 30.6
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-89 334.7 255 65.1
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.9e-85 321.6 221 67.9
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.9e-85 321.6 221 67.9
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 3.8e-81 307.4 392 46.4
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-80 305.1 427 45.7
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 5.4e-80 303.5 531 36.2
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.1e-77 295.8 478 43.3
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 7.3e-77 293.1 481 40.7
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 9.6e-77 292.7 347 47.3
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 2.4e-75 288.1 282 56.7
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 7.1e-64 250.0 619 33.0
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 3.9e-62 244.2 499 33.3
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.9e-61 241.9 351 41.3
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 2.1e-60 238.4 351 44.4
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.9e-54 217.6 252 53.6
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.8e-51 208.8 252 47.6
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.3e-46 191.8 241 42.7
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 2.3e-46 191.8 384 32.8
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 6.7e-46 190.3 491 27.7
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.8e-44 184.9 463 30.9
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.7e-44 184.5 175 53.1
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.2e-40 170.2 137 58.4
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.4e-35 155.2 247 42.1
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.1e-31 142.1 178 44.9
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.1e-31 142.1 178 44.9
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.1e-31 140.6 111 63.1
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 7.7e-26 123.6 172 45.3
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 2.2e-25 122.1 190 40.0
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-25 122.1 172 44.8
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 5.5e-24 117.5 141 49.6
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 6.8e-22 110.5 228 33.8
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 2.0e-21 109.0 78 67.9
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 5.3e-19 100.9 198 35.4
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.2e-18 99.8 596 21.8
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 2.7e-18 98.6 165 41.8
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-15 88.6 159 32.7
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 2.3e-14 85.5 79 55.7
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 2.2e-12 79.0 115 37.4
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 2.2e-12 79.0 102 43.1
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 4.8e-12 77.8 76 55.3
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.7e-10 70.5 144 35.4
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.5e-08 65.5 53 52.8


User provided reference genes

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