Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 1.8e-84 316.2 199 100.0
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 7.9e-69 264.2 199 88.4
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 1.8e-68 263.1 199 87.4
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 1.1e-62 243.8 200 82.5
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 1.4e-60 236.9 202 81.2
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 3.7e-58 228.8 199 78.4
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 1.2e-56 223.8 199 77.4
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 1.7e-55 219.9 201 75.6
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 2.9e-55 219.2 199 75.9
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.1e-54 217.2 199 74.9
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 1.1e-54 217.2 199 74.9
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 2.5e-54 216.1 198 76.3
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 7.2e-54 214.5 200 75.5
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 7.2e-54 214.5 199 73.4
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 9.4e-54 214.2 176 80.1
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 4.7e-53 211.8 199 74.4
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 7.9e-53 211.1 199 74.4
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 1.0e-52 210.7 203 72.9
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 3.0e-52 209.1 192 76.6
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 6.7e-52 208.0 164 84.1
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.5e-51 206.8 192 76.0
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 9.7e-51 204.1 199 70.9
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 1.3e-50 203.8 199 72.4
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.7e-50 203.4 199 72.9
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 2.2e-50 203.0 202 70.3
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 2.2e-50 203.0 197 71.6
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 3.7e-50 202.2 199 71.9
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 3.7e-50 202.2 162 81.5
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 6.3e-50 201.4 192 74.0
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 6.3e-50 201.4 192 74.0
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 6.3e-50 201.4 192 74.0
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 2.4e-49 199.5 202 71.3
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 3.1e-49 199.1 199 70.4
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 3.1e-49 199.1 168 79.2
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 7.0e-49 198.0 149 87.9
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 7.0e-49 198.0 182 75.3
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 9.1e-49 197.6 178 78.1
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 9.1e-49 197.6 196 70.4
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 1.6e-48 196.8 192 72.9
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 2.0e-48 196.4 195 69.7
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 2.6e-48 196.1 166 79.5
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.6e-48 196.1 193 71.0
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 3.5e-48 195.7 148 87.8
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 4.5e-48 195.3 196 71.9
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 5.9e-48 194.9 205 68.3
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 5.9e-48 194.9 154 83.8
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 1.7e-47 193.4 196 68.9
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 2.2e-47 193.0 179 74.9
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.2e-47 193.0 198 69.2
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 2.9e-47 192.6 167 77.8
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 5.0e-47 191.8 197 68.5
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 6.5e-47 191.4 199 69.8
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 6.5e-47 191.4 146 87.7
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 6.5e-47 191.4 196 68.9
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 1.1e-46 190.7 161 77.0
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 1.1e-46 190.7 164 79.3
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 1.1e-46 190.7 205 66.8
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 1.9e-46 189.9 192 71.4
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.9e-46 189.9 196 68.4
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 1.9e-46 189.9 199 68.3
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 4.2e-46 188.7 199 71.4
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 9.4e-46 187.6 202 67.3
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 1.6e-45 186.8 155 80.6
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 1.6e-45 186.8 199 67.3
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 2.1e-45 186.4 176 75.0
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 3.6e-45 185.7 200 70.0
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 6.1e-45 184.9 192 69.8
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 8.0e-45 184.5 200 68.5
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 8.0e-45 184.5 200 68.5
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 8.0e-45 184.5 198 66.7
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.4e-44 183.7 150 82.0
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 1.8e-44 183.3 188 68.6
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 3.0e-44 182.6 199 65.8
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 3.0e-44 182.6 191 69.6
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 3.0e-44 182.6 149 82.6
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 3.0e-44 182.6 179 70.4
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 4.0e-44 182.2 198 65.2
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 5.2e-44 181.8 155 78.1
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 6.7e-44 181.4 202 64.4
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 8.8e-44 181.0 198 64.6
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 1.2e-43 180.6 199 65.3
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 1.2e-43 180.6 192 67.7
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 1.5e-43 180.3 200 68.0
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 1.5e-43 180.3 200 68.0
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 3.3e-43 179.1 199 65.3
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 3.3e-43 179.1 199 65.3
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 4.4e-43 178.7 148 81.8
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 4.4e-43 178.7 199 64.8
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 5.7e-43 178.3 200 67.0
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 5.7e-43 178.3 167 73.1
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 2.2e-42 176.4 199 66.8
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 2.8e-42 176.0 194 65.5
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 1.4e-41 173.7 199 63.3
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 2.4e-41 172.9 201 65.7
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 7.0e-41 171.4 157 75.8
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 1.2e-40 170.6 198 64.1
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 2.0e-40 169.9 204 63.2
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 2.7e-40 169.5 199 63.8
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 7.7e-40 167.9 199 61.8
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 2.2e-39 166.4 204 62.7
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 1.5e-38 163.7 173 70.5
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 8.0e-37 157.9 134 80.6
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 6.8e-36 154.8 199 63.3
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 1.5e-35 153.7 200 61.5
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 2.2e-34 149.8 161 67.1
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 1.8e-33 146.7 195 55.9
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 3.2e-30 136.0 193 56.5
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.0e-27 126.7 162 60.5
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 6.3e-26 121.7 159 58.5
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 5.9e-24 115.2 109 60.6
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 5.6e-22 108.6 166 54.2
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 9.5e-22 107.8 205 49.3
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 1.4e-20 104.0 150 56.0
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 6.8e-20 101.7 127 54.3
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 8.3e-18 94.7 122 62.3
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 1.1e-17 94.4 97 59.8
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 7.0e-17 91.7 140 56.4
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 2.7e-16 89.7 194 45.4
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 3.9e-15 85.9 110 56.4
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 2.1e-13 80.1 118 52.5
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 3.0e-07 59.7 162 42.6


User provided reference genes

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