Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 5.4e-47 190.7 96 100.0
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 6.6e-37 157.1 96 82.3
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 2.8e-35 151.8 97 80.4
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 1.7e-32 142.5 97 77.3
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 1.0e-29 133.3 94 73.4
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 2.5e-28 128.6 96 68.8
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 3.6e-27 124.8 95 70.5
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 6.2e-27 124.0 96 64.6
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 2.3e-26 122.1 97 68.0
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 5.2e-26 120.9 96 63.5
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 9.8e-25 116.7 96 62.5
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 2.9e-24 115.2 95 63.2
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.4e-23 112.8 96 60.4
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 4.1e-23 111.3 99 69.7
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 9.2e-23 110.2 96 60.4
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 1.2e-22 109.8 82 70.7
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 3.0e-21 105.1 92 56.5
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 6.6e-21 104.0 96 57.3
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 6.6e-21 104.0 96 57.3
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 6.6e-21 104.0 94 62.8
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 6.6e-21 104.0 94 59.6
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 8.6e-21 103.6 94 57.4
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 2.5e-20 102.1 96 58.3
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 9.5e-20 100.1 96 55.2
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.8e-19 98.6 92 57.6
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 8.1e-19 97.1 86 53.5
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.4e-18 96.3 91 53.8
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.3e-18 95.5 95 52.6
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.3e-18 95.5 91 53.8
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 8.9e-18 93.6 96 54.2
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 4.4e-17 91.3 86 59.3
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 1.3e-16 89.7 86 58.1
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.4e-15 86.3 96 47.9
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.2e-15 85.1 84 56.0
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 4.1e-15 84.7 90 52.2
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.8e-14 80.5 94 46.8
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 1.3e-13 79.7 71 60.6
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.3e-13 79.7 92 44.6
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.3e-13 79.7 96 43.8
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.7e-13 79.3 96 42.7
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 2.3e-13 79.0 97 46.4
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 3.0e-13 78.6 87 48.3
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 6.6e-13 77.4 94 47.9
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.5e-12 76.3 86 48.8
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 2.5e-12 75.5 97 45.4
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 3.3e-12 75.1 94 46.8
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 7.3e-12 73.9 88 48.9
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.8e-11 72.0 88 46.6
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 2.8e-11 72.0 87 44.8
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 2.8e-11 72.0 93 38.7
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 4.7e-11 71.2 88 50.0
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 1.1e-10 70.1 104 43.3
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 2.4e-10 68.9 86 45.3
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 2.4e-10 68.9 95 44.2
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 3.1e-10 68.6 90 42.2
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 4.0e-10 68.2 84 45.2
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 5.2e-10 67.8 89 43.8
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 8.9e-10 67.0 89 42.7
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 1.2e-09 66.6 96 40.6
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 4.4e-09 64.7 85 42.4
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 4.4e-09 64.7 85 42.4
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 5.8e-09 64.3 94 37.2
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 7.6e-09 63.9 95 41.1
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 9.9e-09 63.5 98 41.8
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 1.3e-08 63.2 90 43.3
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 1.7e-08 62.8 86 43.0
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 2.2e-08 62.4 94 38.3
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 2.9e-08 62.0 94 38.3
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 2.9e-08 62.0 95 42.1
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 3.8e-08 61.6 99 44.4
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 8.4e-08 60.5 92 40.2
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.1e-07 60.1 95 37.9
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.1e-07 60.1 86 39.5
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.4e-07 59.7 92 44.6
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 1.4e-07 59.7 97 43.3
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 3.2e-07 58.5 91 37.4
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.2e-07 58.5 91 40.7
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 5.4e-07 57.8 89 38.2
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.1e-07 57.4 91 39.6
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 7.1e-07 57.4 94 37.2
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 7.1e-07 57.4 94 34.0
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.6e-06 56.2 98 38.8
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 1.6e-06 56.2 98 34.7
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 2.1e-06 55.8 78 41.0
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 3.5e-06 55.1 72 48.6
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.5e-06 55.1 88 39.8
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.5e-06 55.1 88 39.8
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 4.6e-06 54.7 89 38.2
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 6.0e-06 54.3 94 31.9


User provided reference genes

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