Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 8.3e-143 510.4 262 100.0
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 5.6e-123 444.5 252 90.9
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 1.9e-118 429.5 258 85.7
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.0e-116 423.7 258 85.3
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.8e-100 369.8 265 74.0
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 2.2e-98 362.8 237 76.8
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 6.3e-98 361.3 259 72.6
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 1.8e-97 359.8 236 76.7
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 5.3e-97 358.2 231 76.2
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 1.5e-96 356.7 229 76.0
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.0e-96 356.3 231 75.8
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 1.0e-95 354.0 214 81.3
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.3e-95 353.6 237 75.5
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.9e-95 352.4 231 74.9
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.5e-95 350.9 231 74.5
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 1.9e-94 349.7 235 74.5
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 2.5e-94 349.4 228 76.3
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 3.6e-93 345.5 229 74.7
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 1.8e-92 343.2 239 73.2
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 1.8e-92 343.2 255 68.2
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 5.1e-92 341.7 247 67.6
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 1.1e-91 340.5 255 67.8
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 7.4e-91 337.8 239 71.1
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 1.7e-90 336.7 254 66.9
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.8e-89 333.2 234 69.7
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 4.1e-89 332.0 236 70.8
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 2.0e-88 329.7 226 71.2
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 2.6e-88 329.3 239 69.0
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 3.4e-88 328.9 229 72.1
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.2e-87 326.2 236 69.1
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 2.9e-87 325.9 227 73.1
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 2.9e-87 325.9 237 70.5
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 2.9e-87 325.9 273 61.2
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 3.8e-87 325.5 200 81.5
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 3.8e-87 325.5 246 67.5
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 6.5e-87 324.7 237 70.0
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 5.5e-86 321.6 235 67.7
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 9.4e-86 320.9 237 66.7
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.6e-85 320.1 255 63.5
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 3.6e-85 318.9 233 67.8
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 6.1e-85 318.2 234 67.9
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 6.1e-85 318.2 236 65.3
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 7.9e-85 317.8 219 70.8
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 1.8e-84 316.6 247 66.0
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.0e-84 315.8 231 67.5
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 3.0e-84 315.8 234 67.1
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 3.9e-84 315.5 241 64.7
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 5.1e-84 315.1 235 65.5
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 6.7e-84 314.7 234 65.0
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 6.7e-84 314.7 233 67.4
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 2.0e-83 313.2 235 64.3
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.0e-83 313.2 227 68.7
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.0e-83 313.2 226 68.6
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 3.3e-83 312.4 238 66.8
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 3.3e-83 312.4 235 66.8
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 3.3e-83 312.4 273 59.7
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 3.3e-83 312.4 234 64.1
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 4.4e-83 312.0 235 68.5
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 5.7e-83 311.6 233 65.7
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 5.7e-83 311.6 234 66.2
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 5.7e-83 311.6 234 66.7
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 7.4e-83 311.2 235 64.3
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 7.4e-83 311.2 235 64.3
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 7.4e-83 311.2 226 67.3
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 9.7e-83 310.8 233 64.4
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.7e-82 310.1 241 63.5
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.7e-82 310.1 226 67.3
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 1.7e-82 310.1 235 66.0
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 2.2e-82 309.7 235 65.5
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 2.8e-82 309.3 240 63.8
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 2.8e-82 309.3 292 56.2
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.8e-82 308.5 226 68.1
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.1e-81 307.4 242 64.9
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 1.8e-81 306.6 223 67.7
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 2.4e-81 306.2 235 65.1
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.2e-80 303.9 241 63.5
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 1.2e-80 303.9 229 67.2
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 1.5e-80 303.5 232 67.7
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 5.9e-80 301.6 231 65.8
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.9e-79 299.3 226 66.4
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 3.8e-79 298.9 224 67.0
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 6.5e-79 298.1 243 62.1
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 8.5e-79 297.7 243 61.7
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 1.4e-78 297.0 231 62.8
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 5.5e-78 295.0 233 64.4
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.6e-77 293.5 227 65.2
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 4.7e-77 292.0 235 62.1
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 4.7e-77 292.0 227 63.0
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 1.0e-76 290.8 240 61.2
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.4e-76 290.4 224 62.9
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.3e-76 289.7 224 62.5
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 3.0e-76 289.3 217 64.5
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 8.8e-76 287.7 236 61.4
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 8.8e-76 287.7 232 62.1
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 2.6e-75 286.2 226 63.7
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 3.3e-75 285.8 254 58.7
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.3e-75 285.8 230 63.5
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 9.7e-75 284.3 230 63.5
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 2.2e-74 283.1 243 60.5
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.8e-74 282.0 243 60.5
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 4.8e-74 282.0 234 63.7
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 1.8e-73 280.0 239 59.0
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 4.1e-73 278.9 228 62.7
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 9.1e-73 277.7 254 56.7
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.6e-72 276.9 236 59.7
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 3.5e-72 275.8 236 59.3
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 1.7e-71 273.5 230 59.6
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 2.2e-71 273.1 245 58.4
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 2.5e-70 269.6 226 61.1
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.5e-70 269.6 188 71.3
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.2e-70 269.2 265 53.6
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 3.2e-70 269.2 214 65.0
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 3.2e-70 269.2 201 67.2
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 1.0e-68 264.2 269 53.2
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 2.0e-67 260.0 145 86.2
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.4e-65 253.8 239 55.6
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 4.5e-64 248.8 229 55.5
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 5.9e-64 248.4 191 63.4
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.9e-62 243.4 230 56.5
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 2.5e-62 243.0 214 57.0
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 5.5e-62 241.9 278 49.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 4.7e-61 238.8 222 55.0
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 5.2e-60 235.3 245 51.4
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 7.5e-59 231.5 252 48.4
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.7e-58 230.3 142 79.6
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.8e-58 228.8 266 47.7
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 6.3e-58 228.4 238 54.2
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 7.0e-57 224.9 158 70.3
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 7.7e-56 221.5 151 70.9
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 1.1e-54 217.6 231 54.1
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 1.2e-51 207.6 144 69.4
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 5.4e-49 198.7 229 46.7
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.4e-49 198.7 242 48.3
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 5.0e-47 192.2 142 66.2
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 6.1e-45 185.3 170 53.5
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 4.0e-44 182.6 156 59.6
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.4e-42 175.3 163 55.8
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 2.4e-41 173.3 169 53.3
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.6e-37 160.6 136 61.8
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 1.4e-33 147.5 94 75.5
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 2.1e-32 143.7 208 39.9
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 3.9e-31 139.4 124 58.1
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 1.5e-27 127.5 81 76.5
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 1.7e-26 124.0 93 65.6
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 9.2e-25 118.2 238 34.9
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 2.7e-24 116.7 232 34.1
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.8e-24 115.2 122 49.2
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 3.0e-23 113.2 82 64.6
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 1.8e-20 104.0 100 52.0
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.3e-14 82.0 77 55.8
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 3.9e-07 59.7 183 27.3


User provided reference genes

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