Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G182700 Phaseolus vulgaris HOM05D009845 ORTHO05D010624 9.2e-103 377.1 219 100.0
Glyma.04G178200 Glycine max HOM05D009845 ORTHO05D010624 7.1e-79 297.7 219 77.2
Glyma.04G178000 Glycine max HOM05D009845 ORTHO05D010624 1.6e-78 296.6 219 77.2
VMungo1309G2800 Vigna mungo HOM05D009845 ORTHO05D010624 4.0e-74 282.0 219 75.8
Psat5g113560 Pisum sativum HOM05D009845 ORTHO05D010624 8.4e-72 274.2 224 72.3
Ca_16215_v3 Cicer arietinum L. HOM05D009845 ORTHO05D010624 1.4e-71 273.5 224 70.1
TPR.G6905 Trifolium pratense HOM05D009845 ORTHO05D010624 2.3e-69 266.2 224 70.1
Medtr3g078610 Medicago truncatula HOM05D009845 ORTHO05D010624 7.6e-65 251.1 227 67.8
Lj1g0026374 Lotus japonicus HOM05D009845 ORTHO05D010624 7.1e-63 244.6 221 69.2
Lalb_Chr23g0273071 Lupinus albus HOM05D009845 ORTHO05D010624 3.5e-62 242.3 219 70.8
arahy.Tifrunner.gnm1.ann1.XL5EFA Arachis hypogaea HOM05D009845 ORTHO05D010624 4.1e-58 228.8 225 63.6
arahy.Tifrunner.gnm1.ann1.XS77WZ Arachis hypogaea HOM05D009845 ORTHO05D010624 5.3e-58 228.4 228 64.0
Lalb_Chr08g0236141 Lupinus albus HOM05D009845 ORTHO05D010624 1.5e-57 226.9 221 67.0
arahy.Tifrunner.gnm1.ann1.W8CL8V Arachis hypogaea HOM05D009845 ORTHO05D010624 1.5e-52 210.3 245 58.4
arahy.Tifrunner.gnm1.ann1.L3Y80W Arachis hypogaea HOM05D009845 ORTHO05D010624 1.3e-51 207.2 225 60.9
arahy.Tifrunner.gnm1.ann1.3S39J7 Arachis hypogaea HOM05D009845 ORTHO05D010624 1.1e-50 204.1 253 58.1
TPR.G11219 Trifolium pratense HOM05D009845 ORTHO05D010624 5.5e-31 138.7 94 77.7
CANSAT16G0049 Cannabis sativa HOM05D009845 ORTHO05D010624 4.2e-15 85.9 94 51.1
Potri.004G049600 Populus trichocarpa HOM05D009845 ORTHO05D010624 1.0e-13 81.3 93 49.5
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 6.8e-13 78.6 93 50.5
MSTRG.25414 Avicennia marina HOM05D009845 ORTHO05D010624 1.5e-12 77.4 93 47.3
Sabra04G0031300 Salix brachista HOM05D009845 ORTHO05D010624 3.4e-12 76.3 92 47.8
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 3.4e-12 76.3 93 47.3
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 4.4e-12 75.9 93 46.2
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-11 74.3 92 45.7
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-11 74.3 93 45.2
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 1.7e-11 73.9 92 44.6
Oeu033677.1 Olea europaea HOM05D009845 ORTHO05D010624 1.7e-11 73.9 93 45.2
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 3.7e-11 72.8 77 48.1
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 3.7e-11 72.8 130 36.9
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 4.9e-11 72.4 81 45.7
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 1.8e-10 70.5 130 36.2
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 7.0e-10 68.6 81 43.2
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 1.6e-09 67.4 114 40.4
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 2.0e-09 67.0 130 36.2
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 2.7e-09 66.6 115 36.5
Lsat_1_v5_gn_1_129701 Lactuca sativa HOM05D009845 ORTHO05D010624 3.5e-09 66.2 62 56.5
Nitab4.5_0000687g0270 Nicotiana tabacum HOM05D009845 ORTHO05D010624 3.5e-09 66.2 93 40.9
HanXRQChr16g0506281 Helianthus annuus HOM05D029082 ORTHO05D010624 4.5e-09 65.9 48 62.5
ECA248G2152 Erigeron canadensis HOM05D029082 ORTHO05D010624 5.9e-09 65.5 48 62.5
HanXRQChr01g0004171 Helianthus annuus HOM05D029082 ORTHO05D010624 5.9e-09 65.5 48 60.4
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 7.8e-09 65.1 129 36.4
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 2.9e-08 63.2 54 51.9
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 1.1e-07 61.2 58 50.0
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 1.9e-07 60.5 54 51.9
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 1.9e-07 60.5 58 48.3
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 3.3e-07 59.7 54 50.0
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 4.3e-07 59.3 54 50.0
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 7.3e-07 58.5 58 48.3
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 9.5e-07 58.2 110 38.2
RcHm_v2.0_Chr6g0257981 Rosa chinensis HOM05D022571 ORTHO05D010624 1.6e-06 57.4 71 40.8
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 1.6e-06 57.4 55 49.1
TWI39G0104 Tripterygium wilfordii HOM05D011069 ORTHO05D010624 1.6e-06 57.4 47 53.2
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.8e-06 56.6 55 47.3
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 3.6e-06 56.2 112 32.1
SHI20512 Sapria himalayana HOM05D009845 ORTHO05D010624 3.6e-06 56.2 90 40.0
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 3.6e-06 56.2 70 47.1
HPP92_004941 Vanilla planifolia HOM05D023446 ORTHO05D025972 3.6e-06 56.2 111 38.7
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 6.1e-06 55.5 59 40.7
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 6.1e-06 55.5 54 48.1
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 6.1e-06 55.5 59 42.4
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 8.0e-06 55.1 58 43.1
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.0e-06 55.1 54 48.1


User provided reference genes

Program Settings