Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 2.1e-32 141.7 71 100.0
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 2.3e-23 111.7 71 83.1
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 4.0e-23 110.9 72 79.2
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 1.2e-22 109.4 71 81.7
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 1.2e-22 109.4 72 80.6
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 1.5e-22 109.0 71 80.3
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 2.6e-22 108.2 71 78.9
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 5.8e-22 107.1 71 78.9
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 8.1e-16 86.7 76 64.5
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 5.2e-15 84.0 79 57.0
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 5.2e-15 84.0 74 60.8
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 1.2e-14 82.8 81 59.3
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 1.2e-14 82.8 78 59.0
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 4.4e-14 80.9 76 59.2
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 5.8e-14 80.5 79 57.0
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 5.8e-14 80.5 78 57.7
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 1.7e-13 79.0 81 56.8
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.7e-13 79.0 79 58.2
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.9e-13 78.2 75 61.3
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 3.7e-13 77.8 76 57.9
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 4.9e-13 77.4 76 59.2
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 8.3e-13 76.6 78 55.1
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 8.3e-13 76.6 83 51.8
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 8.3e-13 76.6 76 59.2
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 1.1e-12 76.3 79 57.0
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 1.9e-12 75.5 75 58.7
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.4e-12 75.1 77 57.1
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 2.4e-12 75.1 76 53.9
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 2.4e-12 75.1 75 53.3
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 5.4e-12 73.9 68 60.3
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 7.1e-12 73.6 80 55.0
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 9.2e-12 73.2 71 56.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.2e-11 72.8 79 53.2
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 1.6e-11 72.4 78 50.0
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 2.1e-11 72.0 83 51.8
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 2.1e-11 72.0 76 55.3
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 3.5e-11 71.2 78 53.8
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 6.0e-11 70.5 81 53.1
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 6.0e-11 70.5 76 55.3
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 7.8e-11 70.1 81 50.6
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 7.8e-11 70.1 76 51.3
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.0e-10 69.7 80 51.2
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.0e-10 69.7 80 51.2
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 1.0e-10 69.7 74 52.7
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.3e-10 69.3 77 54.5
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.7e-10 68.9 80 52.5
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 1.7e-10 68.9 84 50.0
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.7e-10 68.9 74 54.1
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.3e-10 68.6 74 54.1
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.3e-10 68.6 74 54.1
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 3.0e-10 68.2 79 49.4
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 3.0e-10 68.2 74 51.4
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.9e-10 67.8 83 55.4
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.9e-10 67.8 83 55.4
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 3.9e-10 67.8 73 54.8
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 5.1e-10 67.4 70 52.9
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.1e-10 67.4 70 52.9
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 6.6e-10 67.0 68 52.9
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 6.6e-10 67.0 68 52.9
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 6.6e-10 67.0 74 54.1
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 6.6e-10 67.0 84 48.8
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 8.6e-10 66.6 75 52.0
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 1.1e-09 66.2 68 52.9
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.5e-09 65.9 83 54.2
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.5e-09 65.9 77 51.9
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.5e-09 65.9 77 51.9
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 1.9e-09 65.5 86 45.3
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.9e-09 65.5 81 48.1
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.9e-09 65.5 72 58.3
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.5e-09 65.1 71 46.5
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 2.5e-09 65.1 77 49.4
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 3.3e-09 64.7 82 48.8
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 4.3e-09 64.3 86 41.9
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 4.3e-09 64.3 85 47.1
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 4.3e-09 64.3 77 51.9
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 4.3e-09 64.3 74 52.7
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.6e-09 63.9 83 53.0
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 5.6e-09 63.9 76 51.3
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 5.6e-09 63.9 83 44.6
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 5.6e-09 63.9 76 51.3
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 7.3e-09 63.5 79 48.1
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 9.5e-09 63.2 85 44.7
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.1e-08 62.0 70 52.9
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.1e-08 62.0 80 48.8
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 2.8e-08 61.6 81 46.9
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 2.8e-08 61.6 84 44.0
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 2.8e-08 61.6 83 50.6
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 2.8e-08 61.6 83 49.4
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 2.8e-08 61.6 88 43.2
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.8e-08 61.6 69 50.7
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 4.7e-08 60.8 85 41.2
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 4.7e-08 60.8 85 41.2
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 6.2e-08 60.5 78 48.7
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 8.1e-08 60.1 88 42.0
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 8.1e-08 60.1 73 54.8
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 8.1e-08 60.1 77 48.1
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.1e-07 59.7 81 48.1
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 1.4e-07 59.3 82 47.6
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 2.4e-07 58.5 80 43.8
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.4e-07 58.5 74 47.3
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.4e-07 58.5 74 47.3
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 2.4e-07 58.5 73 49.3
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 2.4e-07 58.5 73 53.4
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 2.4e-07 58.5 70 50.0
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 3.1e-07 58.2 74 47.3
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 3.1e-07 58.2 75 50.7
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.1e-07 58.2 71 46.5
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 3.1e-07 58.2 73 49.3
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 4.0e-07 57.8 85 43.5
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.0e-07 57.8 76 48.7
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 4.0e-07 57.8 82 43.9
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 4.0e-07 57.8 71 49.3
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 5.2e-07 57.4 80 46.2
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 6.8e-07 57.0 72 47.2
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 6.8e-07 57.0 69 52.2
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 8.9e-07 56.6 86 47.7
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 8.9e-07 56.6 76 44.7
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 1.2e-06 56.2 74 47.3
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 1.2e-06 56.2 74 47.3
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.2e-06 56.2 72 45.8
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.2e-06 56.2 81 42.0
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.5e-06 55.8 71 53.5
Glyma.14G206400 Glycine max HOM05D003533 ORTHO05D004009 1.5e-06 55.8 47 70.2
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 2.0e-06 55.5 75 46.7
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 2.0e-06 55.5 50 62.0
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.0e-06 55.5 73 52.1
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 2.6e-06 55.1 79 48.1
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 2.6e-06 55.1 72 50.0
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 3.4e-06 54.7 75 45.3
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 5.8e-06 53.9 79 43.0
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 5.8e-06 53.9 78 48.7
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 7.6e-06 53.5 74 48.6
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 9.9e-06 53.1 53 50.9
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 9.9e-06 53.1 66 51.5


User provided reference genes

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