Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 4.8e-27 124.0 74 100.0
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 5.8e-25 117.1 74 91.9
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 7.6e-25 116.7 74 91.9
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.7e-24 115.5 74 93.2
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 2.2e-24 115.2 74 93.2
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 2.9e-24 114.8 74 91.9
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.4e-23 112.5 72 88.9
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.4e-23 112.5 74 89.2
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 3.2e-23 111.3 71 90.1
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 4.2e-23 110.9 74 89.2
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 5.4e-23 110.5 74 86.5
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.2e-22 109.4 74 89.2
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.7e-21 105.5 74 75.7
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.3e-21 105.1 72 77.8
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 2.3e-21 105.1 76 81.6
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 2.3e-21 105.1 74 83.8
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 5.1e-21 104.0 74 83.8
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 5.1e-21 104.0 74 82.4
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 6.6e-21 103.6 74 86.5
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 6.6e-21 103.6 71 84.5
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.1e-20 102.8 75 80.0
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.1e-20 102.8 75 80.0
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.5e-20 102.4 71 84.5
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.5e-20 102.4 71 84.5
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.5e-20 102.4 71 84.5
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.5e-20 102.4 74 85.1
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.5e-20 102.4 74 85.1
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 1.9e-20 102.1 74 79.7
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 2.5e-20 101.7 74 83.8
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.5e-20 101.7 74 83.8
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 2.5e-20 101.7 71 83.1
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 3.3e-20 101.3 74 83.8
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 3.3e-20 101.3 74 86.5
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 3.3e-20 101.3 72 72.2
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 4.3e-20 100.9 71 84.5
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.3e-20 100.9 71 84.5
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 4.3e-20 100.9 73 80.8
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 4.3e-20 100.9 74 74.3
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 4.3e-20 100.9 75 78.7
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 4.3e-20 100.9 74 77.0
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 4.3e-20 100.9 74 77.0
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 7.3e-20 100.1 75 80.0
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 7.3e-20 100.1 74 83.8
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 7.3e-20 100.1 74 73.0
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 7.3e-20 100.1 74 85.1
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 9.6e-20 99.8 74 82.4
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.3e-19 99.4 74 82.4
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 1.6e-19 99.0 74 85.1
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 1.6e-19 99.0 74 85.1
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.6e-19 99.0 74 82.4
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 1.6e-19 99.0 74 85.1
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 2.1e-19 98.6 73 80.8
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 2.1e-19 98.6 74 71.6
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 3.6e-19 97.8 74 81.1
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 3.6e-19 97.8 73 82.2
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.6e-19 97.8 74 77.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 6.2e-19 97.1 71 83.1
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 8.1e-19 96.7 76 81.6
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 8.1e-19 96.7 74 74.3
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 8.1e-19 96.7 74 83.8
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.4e-18 95.9 74 81.1
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 2.4e-18 95.1 75 77.3
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 3.1e-18 94.7 75 80.0
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 3.1e-18 94.7 82 76.8
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 4.0e-18 94.4 73 78.1
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 5.3e-18 94.0 75 78.7
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 5.3e-18 94.0 72 81.9
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 5.3e-18 94.0 75 72.0
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.3e-18 94.0 75 80.0
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 6.9e-18 93.6 75 76.0
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 9.0e-18 93.2 74 70.3
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 9.0e-18 93.2 76 75.0
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 1.2e-17 92.8 73 71.2
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 2.6e-17 91.7 76 72.4
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 4.5e-17 90.9 74 78.4
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 4.5e-17 90.9 74 78.4
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 4.5e-17 90.9 74 78.4
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 4.5e-17 90.9 75 78.7
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 4.5e-17 90.9 76 80.3
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 4.5e-17 90.9 74 66.2
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 5.8e-17 90.5 75 73.3
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 5.8e-17 90.5 75 66.7
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.8e-17 90.5 74 68.9
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 7.6e-17 90.1 74 78.4
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 9.9e-17 89.7 75 77.3
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 9.9e-17 89.7 75 77.3
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.3e-16 89.4 74 75.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 1.7e-16 89.0 75 76.0
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.7e-16 89.0 75 78.7
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 2.9e-16 88.2 75 69.3
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.9e-16 87.4 74 71.6
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.4e-16 87.0 72 72.2
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.4e-16 87.0 72 72.2
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.4e-16 87.0 72 72.2
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.4e-16 87.0 72 72.2
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 6.4e-16 87.0 73 69.9
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 8.4e-16 86.7 73 67.1
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 8.4e-16 86.7 70 80.0
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 1.1e-15 86.3 71 78.9
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.4e-15 85.9 74 70.3
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 1.4e-15 85.9 74 73.0
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 3.2e-15 84.7 75 77.3
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 3.2e-15 84.7 72 70.8
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 5.4e-15 84.0 74 73.0
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 69.4
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 9.3e-15 83.2 72 69.4
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 2.1e-14 82.0 75 76.0
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 71.6
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 71.6
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 4.6e-14 80.9 75 72.0
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 7.9e-14 80.1 75 78.7
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 1.3e-13 79.3 70 71.4
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 1.3e-13 79.3 70 71.4
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 1.3e-13 79.3 70 71.4
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 1.3e-13 79.3 70 71.4
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 1.3e-13 79.3 47 85.1
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 1.8e-13 79.0 48 83.3
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 1.8e-13 79.0 81 71.6
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.8e-13 79.0 72 70.8
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 1.8e-13 79.0 74 66.2
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.3e-13 78.6 70 62.9
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 3.9e-13 77.8 74 71.6
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 3.9e-13 77.8 73 69.9
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 5.1e-13 77.4 75 72.0
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 6.7e-13 77.0 74 73.0
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 6.7e-13 77.0 46 84.8
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 6.7e-13 77.0 72 63.9
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.1e-12 76.3 65 75.4
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 1.1e-12 76.3 74 68.9
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.5e-12 75.9 74 67.6
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 4.3e-12 74.3 74 71.6
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 4.3e-12 74.3 73 63.0
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 5.6e-12 73.9 49 79.6
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 7.4e-12 73.6 59 81.4
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 7.4e-12 73.6 68 75.0
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 9.6e-12 73.2 74 66.2
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 1.3e-11 72.8 128 46.9
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 2.1e-11 72.0 75 68.0
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 3.7e-11 71.2 68 58.8
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 6.2e-11 70.5 72 62.5
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 6.2e-11 70.5 74 68.9
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.1e-10 69.7 82 53.7
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 1.1e-10 69.7 66 62.1
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 1.4e-10 69.3 125 48.0
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.4e-10 69.3 71 70.4
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 1.4e-10 69.3 71 70.4
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 1.8e-10 68.9 74 67.6
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 1.8e-10 68.9 49 73.5
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 3.1e-10 68.2 74 64.9
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 3.1e-10 68.2 66 69.7
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 4.0e-10 67.8 72 66.7
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 9.0e-10 66.6 63 71.4
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.5e-09 65.9 67 67.2
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 3.4e-09 64.7 77 66.2
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 4.5e-09 64.3 70 70.0
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 4.5e-09 64.3 110 46.4
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 5.8e-09 63.9 77 54.5
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 7.6e-09 63.5 68 69.1
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 2.9e-08 61.6 74 62.2
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 3.8e-08 61.2 77 63.6
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 3.8e-08 61.2 70 68.6
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 6.5e-08 60.5 116 48.3
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 8.4e-08 60.1 49 69.4
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 8.4e-08 60.1 49 69.4
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 1.4e-07 59.3 49 59.2
unitig_749.g13471 Utricularia gibba HOM05D003549 ORTHO05D004223 1.4e-07 59.3 76 63.2
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 2.5e-07 58.5 67 53.7
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 2.5e-07 58.5 76 59.2
Sopen12g011080 Solanum pennellii HOM05D003549 ORTHO05D004223 2.5e-07 58.5 45 71.1
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 3.2e-07 58.2 70 65.7
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 7.1e-07 57.0 71 56.3
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 9.3e-07 56.6 93 53.8
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 9.3e-07 56.6 41 68.3
Gohir.A12G273400 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.6e-06 55.8 75 62.7
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 2.1e-06 55.5 64 65.6
ATR0752G058 Amborella trichopoda HOM05D003549 ORTHO05D004223 2.7e-06 55.1 72 61.1
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 3.5e-06 54.7 67 56.7
DCAR_016492 Daucus carota HOM05D003549 ORTHO05D004223 4.6e-06 54.3 71 62.0
CDE05G3179 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 7.9e-06 53.5 74 48.6
Hund12012 Selenicereus undatus HOM05D003549 ORTHO05D004223 7.9e-06 53.5 68 60.3


User provided reference genes

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