Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 9.5e-192 673.3 333 100.0
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.0e-177 626.7 333 91.9
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.2e-165 586.6 333 86.8
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 1.2e-162 576.6 333 85.0
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 1.3e-143 513.5 333 76.0
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.4e-134 483.4 333 73.3
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 6.9e-134 481.1 333 70.3
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 2.7e-130 469.2 333 70.6
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 1.8e-126 456.4 335 69.9
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 2.5e-123 446.0 339 66.4
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 9.3e-123 444.1 340 63.8
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 1.2e-122 443.7 341 64.2
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 6.3e-119 431.4 340 64.4
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 4.1e-118 428.7 333 66.1
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.2e-111 406.4 342 62.6
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 5.3e-110 401.7 333 62.2
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 4.5e-109 398.7 331 61.0
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 3.8e-108 395.6 340 59.1
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 5.0e-108 395.2 340 59.7
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.1e-107 394.0 340 59.1
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 1.1e-102 377.5 342 57.0
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 7.0e-102 374.8 340 55.9
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 9.1e-102 374.4 344 55.2
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 6.5e-100 368.2 340 55.0
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.9e-99 366.7 341 57.5
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 4.7e-98 362.1 350 53.4
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.4e-97 360.5 341 56.6
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 5.3e-94 348.6 344 51.5
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 7.0e-94 348.2 345 52.8
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 9.1e-94 347.8 344 54.7
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.0e-93 346.7 346 54.6
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 4.5e-93 345.5 344 51.2
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 7.7e-93 344.7 344 52.0
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 7.7e-93 344.7 345 54.5
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 2.2e-92 343.2 341 51.6
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.1e-91 340.9 344 52.3
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.2e-91 339.0 345 53.0
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.5e-91 338.6 341 52.5
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.6e-90 335.9 340 52.4
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.7e-90 335.5 344 52.9
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 4.7e-90 335.5 355 54.4
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 8.0e-90 334.7 345 52.5
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.8e-89 333.6 277 58.5
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 4.0e-89 332.4 340 52.1
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.5e-88 330.5 344 50.0
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.3e-87 327.4 336 48.8
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.7e-87 325.9 341 51.3
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.8e-87 325.5 344 48.5
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 6.3e-87 325.1 344 52.3
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.1e-86 322.4 344 48.0
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 5.3e-86 322.0 344 48.8
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 5.3e-86 322.0 344 47.7
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.6e-85 320.5 344 47.4
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.5e-85 319.3 343 49.6
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.3e-84 317.4 343 49.3
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 8.5e-84 314.7 350 48.9
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.1e-83 314.3 342 48.8
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.5e-83 313.9 344 50.3
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 3.6e-82 309.3 345 50.1
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 4.7e-82 308.9 344 49.7
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.0e-81 307.8 340 47.9
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.8e-81 307.0 309 52.1
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 3.0e-81 306.2 344 47.1
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 8.8e-81 304.7 344 44.2
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 4.4e-80 302.4 350 45.7
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 5.7e-80 302.0 334 48.2
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.5e-80 301.6 344 43.9
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.5e-80 301.6 342 46.8
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 2.2e-79 300.1 344 48.8
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 2.8e-79 299.7 344 48.8
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.8e-79 298.9 337 46.9
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 6.3e-79 298.5 344 49.1
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 8.3e-79 298.1 350 45.1
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 8.3e-79 298.1 346 45.7
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.4e-78 297.4 323 49.5
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.4e-78 296.6 342 48.0
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.4e-78 296.6 342 48.0
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 4.1e-78 295.8 347 45.0
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.2e-77 294.3 350 44.0
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.0e-77 293.5 338 45.9
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.7e-77 293.1 348 45.7
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.7e-77 293.1 325 48.6
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 4.5e-77 292.4 336 46.4
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.3e-76 290.8 341 48.1
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.3e-76 290.8 307 50.5
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 2.3e-76 290.0 344 44.5
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.9e-76 289.7 315 49.8
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 3.8e-76 289.3 338 45.3
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.9e-75 287.0 350 44.6
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.5e-75 286.6 343 45.5
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 3.3e-75 286.2 327 47.4
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 7.2e-75 285.0 344 43.9
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 9.5e-75 284.6 340 45.9
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.2e-74 284.3 344 42.4
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 4.7e-74 282.3 340 47.1
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.4e-73 280.8 315 46.7
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.0e-73 279.6 347 45.2
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 5.2e-73 278.9 349 45.6
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 4.4e-72 275.8 348 44.8
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.4e-72 275.8 351 43.9
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 2.8e-71 273.1 344 43.9
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 2.4e-70 270.0 293 48.1
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 3.2e-70 269.6 326 45.1
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 5.4e-70 268.9 345 44.6
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.6e-69 267.3 308 46.8
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.3e-68 263.5 308 48.1
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.5e-67 260.8 308 47.4
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.9e-67 260.4 337 45.1
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 2.5e-67 260.0 331 44.1
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 4.3e-67 259.2 296 47.0
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.1e-66 256.9 317 45.4
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.1e-66 256.9 344 40.7
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 3.1e-65 253.1 344 41.9
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 5.2e-65 252.3 348 43.7
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.2e-64 251.1 343 41.7
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.6e-64 250.0 324 44.4
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.3e-63 247.7 348 43.1
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 2.2e-63 246.9 323 44.6
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.9e-63 245.7 346 41.0
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 4.9e-63 245.7 348 41.7
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-62 244.6 328 44.2
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 4.1e-62 242.7 260 51.2
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 7.0e-62 241.9 326 42.3
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 3.3e-59 233.0 344 40.1
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 4.3e-59 232.6 280 44.3
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.3e-57 226.9 337 40.4
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 4.0e-57 226.1 284 41.9
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 4.4e-56 222.6 348 40.5
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.4e-54 217.6 343 39.1
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.4e-54 216.9 280 43.6
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 4.1e-54 216.1 278 42.8
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 7.8e-53 211.8 346 36.7
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.4e-49 201.1 199 51.3
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.7e-47 194.1 137 65.7
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 2.2e-47 193.7 334 35.6
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 7.1e-46 188.7 297 40.4
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 9.2e-46 188.3 333 34.5
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.5e-43 181.0 137 62.0
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.6e-43 178.3 129 63.6
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.1e-42 177.2 234 39.7
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.4e-41 174.5 334 35.9
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 5.8e-40 169.1 213 40.8
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 4.4e-32 142.9 291 33.0
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 9.3e-30 135.2 283 33.6
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 6.0e-29 132.5 99 61.6
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.3e-15 88.2 133 39.1
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 1.4e-14 84.7 196 32.1
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 4.6e-13 79.7 270 28.9


User provided reference genes

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