Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 7.8e-41 170.2 100 100.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 5.2e-37 157.5 100 90.0
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 1.5e-36 156.0 100 90.0
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 2.0e-36 155.6 100 91.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 2.6e-36 155.2 100 85.0
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 2.2e-35 152.1 100 86.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 2.2e-35 152.1 100 86.0
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 6.4e-35 150.6 100 85.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 1.9e-34 149.1 92 89.1
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 5.4e-34 147.5 100 88.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 2.7e-33 145.2 100 81.0
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 4.6e-33 144.4 100 85.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 4.6e-33 144.4 100 81.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 1.0e-32 143.3 100 70.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 1.7e-32 142.5 100 89.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 3.0e-32 141.7 100 85.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 3.9e-32 141.4 100 77.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 5.1e-32 141.0 100 83.0
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 1.1e-31 139.8 100 70.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 1.9e-31 139.0 100 73.0
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 2.5e-31 138.7 100 69.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 3.3e-31 138.3 100 75.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 7.3e-31 137.1 100 76.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 9.6e-31 136.7 100 79.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 9.6e-31 136.7 100 79.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.3e-30 136.3 100 71.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 3.6e-30 134.8 100 74.0
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 4.8e-30 134.4 100 79.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 4.8e-30 134.4 100 79.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 8.1e-30 133.7 100 74.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 8.1e-30 133.7 98 82.7
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 1.8e-29 132.5 100 81.0
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 1.8e-29 132.5 100 81.0
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 5.3e-29 131.0 100 74.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 5.3e-29 131.0 100 72.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 1.2e-28 129.8 100 73.0
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 1.2e-28 129.8 100 77.0
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 1.5e-28 129.4 100 77.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 2.0e-28 129.0 100 79.0
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 2.0e-28 129.0 100 71.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 2.6e-28 128.6 100 70.0
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 2.6e-28 128.6 100 77.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 2.6e-28 128.6 100 77.0
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 4.4e-28 127.9 100 70.0
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 5.8e-28 127.5 100 68.0
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 5.8e-28 127.5 100 76.0
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 9.9e-28 126.7 98 74.5
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 4.9e-27 124.4 100 77.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 1.1e-26 123.2 93 65.6
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 3.2e-26 121.7 98 75.5
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 5.4e-26 120.9 100 62.0
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 5.4e-26 120.9 100 75.0
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 5.4e-26 120.9 93 80.6
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 5.4e-26 120.9 100 72.0
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 7.1e-26 120.6 100 65.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 9.3e-26 120.2 75 76.0
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 1.2e-25 119.8 100 74.0
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 1.6e-25 119.4 100 70.0
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 1.6e-25 119.4 131 61.8
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 3.5e-25 118.2 100 60.0
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 2.3e-24 115.5 100 57.0
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 3.0e-24 115.2 100 75.0
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 6.6e-24 114.0 72 76.4
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.5e-23 112.8 100 67.0
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 1.9e-23 112.5 96 62.5
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 3.3e-23 111.7 100 71.0
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 3.3e-23 111.7 100 73.0
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 3.3e-23 111.7 100 73.0
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 5.6e-23 110.9 101 65.3
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 7.3e-23 110.5 69 76.8
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 7.3e-23 110.5 98 66.3
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 9.6e-23 110.2 102 63.7
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 1.6e-22 109.4 102 68.6
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 2.8e-22 108.6 102 63.7
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 2.8e-22 108.6 100 64.0
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 1.1e-21 106.7 100 63.0
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.1e-21 106.7 100 73.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 2.4e-21 105.5 102 61.8
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 2.0e-20 102.4 100 59.0
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 6.4e-19 97.4 102 58.8
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 6.4e-19 97.4 102 58.8
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 8.4e-19 97.1 72 63.9
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 8.4e-19 97.1 72 63.9
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 8.4e-19 97.1 72 63.9
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.9e-18 95.9 100 53.0
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 7.1e-18 94.0 100 55.0
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 2.1e-17 92.4 100 52.0
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 1.0e-16 90.1 100 54.0
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 1.3e-16 89.7 100 57.0
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 1.9e-15 85.9 48 83.3
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 4.3e-15 84.7 53 73.6
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 5.6e-15 84.3 48 83.3
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 1.3e-14 83.2 100 52.0
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 2.8e-14 82.0 100 52.0
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 8.1e-14 80.5 100 51.0
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 8.1e-14 80.5 100 50.0
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 1.8e-13 79.3 48 77.1
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 9.0e-13 77.0 90 51.1
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 1.5e-12 76.3 90 50.0
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 1.3e-11 73.2 58 62.1
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 1.7e-11 72.8 48 68.8
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 6.5e-11 70.9 93 54.8
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 8.4e-11 70.5 61 68.9
DCAR_006239 Daucus carota HOM05D006995 ORTHO05D008870 1.1e-10 70.1 100 53.0
TPR.G22880 Trifolium pratense HOM05D006995 ORTHO05D008870 1.1e-10 70.1 52 82.7
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 1.4e-10 69.7 46 71.7
Nn3g16705 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.9e-10 69.3 61 72.1
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 4.2e-10 68.2 80 55.0
Mapoly0052s0030 Marchantia polymorpha HOM05D006995 ORTHO05D008870 2.3e-08 62.4 68 47.1
TAR629G2225 Trochodendron aralioides HOM05D000001 ORTHO05D414751 3.9e-08 61.6 53 71.7
MBI15_g24199_MAGBIO Magnolia biondii HOM05D006995 ORTHO05D008870 4.8e-06 54.7 91 52.7


User provided reference genes

Program Settings