Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 0.0e+00 1196.4 638 100.0
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 3.1e-311 1071.2 640 88.0
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 5.9e-291 1003.8 613 85.5
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 5.9e-291 1003.8 613 85.5
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 1.8e-287 992.3 646 82.4
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 1.5e-283 979.2 656 80.3
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 5.9e-283 977.2 641 81.0
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 1.1e-281 973.0 615 82.4
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 5.5e-273 944.1 642 79.8
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 1.2e-262 909.8 638 77.0
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 4.5e-259 897.9 651 74.5
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 6.1e-256 887.5 648 71.9
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 8.8e-247 857.1 672 68.8
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.7e-242 842.8 639 70.9
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 6.6e-242 840.9 613 72.1
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.3e-241 838.6 614 72.0
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 7.3e-241 837.4 640 68.3
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.6e-240 836.3 614 71.7
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 2.1e-240 835.9 646 68.4
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 5.2e-239 831.2 624 70.7
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 3.4e-238 828.6 629 70.0
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 1.7e-237 826.2 627 68.6
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 3.0e-234 815.5 629 69.8
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.2e-232 810.1 612 69.0
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 3.6e-232 808.5 625 70.2
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.4e-231 806.6 625 70.1
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 2.3e-231 805.8 669 65.5
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 8.9e-231 803.9 625 69.9
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.2e-230 803.5 654 65.3
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 3.4e-230 802.0 611 68.9
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.3e-229 800.0 546 76.2
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.9e-229 798.9 537 76.9
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 2.9e-229 798.9 627 68.9
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 8.3e-229 797.3 611 70.9
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.1e-228 797.0 615 68.0
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.4e-228 796.6 619 66.9
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 2.7e-227 792.3 635 66.8
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 2.7e-227 792.3 640 65.8
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 4.6e-227 791.6 624 66.5
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 1.0e-226 790.4 564 72.0
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.7e-226 789.6 627 66.8
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 8.6e-226 787.3 634 65.8
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.6e-224 783.1 632 65.2
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 3.6e-224 781.9 618 66.2
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 3.1e-223 778.9 576 68.9
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 1.2e-222 776.9 620 66.0
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 1.7e-221 773.1 623 68.5
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.7e-221 771.9 626 64.4
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.1e-220 770.4 603 68.7
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 9.2e-220 767.3 599 68.3
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 7.8e-219 764.2 573 69.8
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 1.7e-218 763.1 603 69.0
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.3e-218 762.7 656 64.0
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 5.6e-217 758.1 628 64.0
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 3.1e-215 752.3 654 61.9
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 1.5e-214 750.0 629 64.7
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 3.4e-214 748.8 619 64.0
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 5.8e-214 748.0 629 64.2
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 8.4e-213 744.2 605 65.6
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 6.0e-211 738.0 602 66.4
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 1.7e-210 736.5 631 63.2
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 2.3e-210 736.1 578 67.0
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 6.2e-208 728.0 621 62.2
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 1.2e-206 723.8 619 61.6
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 4.4e-206 721.8 643 61.6
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 2.2e-205 719.5 623 64.7
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 8.4e-205 717.6 625 63.0
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.4e-204 716.8 630 61.7
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 5.4e-204 714.9 521 69.3
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 1.6e-203 713.4 619 61.1
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 1.6e-203 713.4 620 61.3
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 2.3e-202 709.5 619 59.6
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 7.3e-201 704.5 628 61.3
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 4.8e-200 701.8 589 62.5
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 2.4e-199 699.5 542 67.2
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 8.7e-194 681.0 620 59.7
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 1.9e-193 679.9 636 58.0
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 2.9e-189 666.0 360 94.7
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 7.1e-188 661.4 645 57.8
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 9.3e-188 661.0 655 56.2
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.1e-187 659.8 621 58.0
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 2.3e-186 656.4 621 57.6
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.1e-185 654.1 639 60.3
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 6.9e-183 644.8 650 53.8
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 2.6e-182 642.9 620 56.8
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 1.7e-181 640.2 620 56.8
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 1.7e-181 640.2 610 56.4
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 3.3e-177 625.9 609 56.0
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 5.7e-177 625.2 507 66.5
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.1e-167 594.3 478 67.2
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 6.1e-163 578.6 439 70.4
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.0e-162 576.2 602 51.7
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 6.3e-160 568.5 469 66.7
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.0e-159 565.1 534 59.2
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 3.1e-151 539.7 484 59.9
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 2.7e-142 510.0 611 49.4
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 6.1e-139 498.8 385 68.3
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 2.7e-134 483.4 635 44.3
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.0e-133 481.5 419 63.0
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 1.7e-133 480.7 627 43.4
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 2.9e-133 479.9 630 44.4
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.4e-127 461.1 364 67.6
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.6e-124 449.1 332 68.4
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 2.6e-121 440.3 277 86.3
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 8.0e-115 418.7 315 66.7
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 3.3e-108 396.7 514 46.3
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.6e-99 366.7 539 43.0
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 1.3e-83 315.1 302 59.6
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.4e-76 289.3 247 62.3
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.9e-70 269.2 206 65.5
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.9e-69 266.9 351 44.7
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 4.3e-68 263.5 207 66.7
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 1.6e-67 261.5 266 57.9
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.7e-67 260.4 194 66.5
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.4e-66 258.5 172 76.2
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.9e-61 240.4 213 60.1
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 2.7e-54 217.6 184 63.6
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.0e-48 199.1 161 64.0
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.7e-48 198.4 161 64.0
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.1e-46 191.4 245 51.0
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.6e-44 184.5 168 53.6
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.7e-40 171.8 138 68.8
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.9e-40 171.0 123 67.5
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 2.3e-37 161.4 168 61.3
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 9.1e-34 149.4 105 70.5
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-28 131.0 93 71.0
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-28 131.0 101 65.3
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 1.7e-27 128.6 89 74.2
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.4e-26 124.8 78 76.9
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 7.0e-26 123.2 142 52.1
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-25 122.1 97 63.9
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 9.4e-23 112.8 307 29.6
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-20 105.5 80 67.5
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 7.0e-18 96.7 82 63.4
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 4.5e-17 94.0 58 72.4
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 1.0e-16 92.8 70 60.0
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 1.4e-10 72.4 46 67.4
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 2.4e-10 71.6 49 71.4
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 5.4e-10 70.5 46 65.2
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 5.4e-10 70.5 46 65.2
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 5.9e-09 67.0 86 45.3
Lj1g0027048 Lotus japonicus HOM05D005920 ORTHO05D007211 2.8e-06 58.2 119 31.1
Ciclev10001211m.g Citrus clementina HOM05D005920 ORTHO05D007211 8.0e-06 56.6 105 33.3


User provided reference genes

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