Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 1.1e-40 169.5 86 100.0
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 2.6e-16 88.6 66 72.7
Lj1g0020512 Lotus japonicus HOM05D007996 ORTHO05D009821 5.5e-11 70.9 58 74.1
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 3.6e-10 68.2 56 69.6
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 4.7e-10 67.8 68 60.3
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 8.0e-10 67.0 65 63.1
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 1.0e-09 66.6 63 63.5
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 1.8e-09 65.9 67 62.7
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 3.0e-09 65.1 64 59.4
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 4.0e-09 64.7 65 63.1
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 5.2e-09 64.3 65 61.5
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 6.8e-09 63.9 63 60.3
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 6.8e-09 63.9 64 60.9
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 6.8e-09 63.9 71 56.3
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 8.9e-09 63.5 58 63.8
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 8.9e-09 63.5 70 55.7
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 8.9e-09 63.5 70 55.7
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 8.9e-09 63.5 70 55.7
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 1.2e-08 63.2 71 50.7
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 1.5e-08 62.8 63 60.3
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 1.5e-08 62.8 61 57.4
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 1.5e-08 62.8 66 59.1
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 1.5e-08 62.8 64 60.9
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 2.0e-08 62.4 62 62.9
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 2.6e-08 62.0 40 80.0
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 2.6e-08 62.0 63 61.9
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 2.6e-08 62.0 63 61.9
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 2.6e-08 62.0 63 61.9
VMungo1309G1522 Vigna mungo HOM05D048527 ORTHO05D018083 2.6e-08 62.0 39 87.2
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 3.4e-08 61.6 65 63.1
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 3.4e-08 61.6 73 52.1
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 3.4e-08 61.6 35 85.7
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 5.7e-08 60.8 62 61.3
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 9.8e-08 60.1 44 70.5
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 9.8e-08 60.1 65 60.0
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 9.8e-08 60.1 69 55.1
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 1.3e-07 59.7 66 54.5
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 1.3e-07 59.7 64 57.8
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 1.7e-07 59.3 40 75.0
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 2.2e-07 58.9 40 75.0
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 2.8e-07 58.5 71 52.1
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 2.8e-07 58.5 57 63.2
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 2.8e-07 58.5 62 58.1
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 6.3e-07 57.4 61 57.4
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 6.3e-07 57.4 74 52.7
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 6.3e-07 57.4 40 72.5
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 6.3e-07 57.4 66 53.0
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 6.3e-07 57.4 64 57.8
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 6.3e-07 57.4 70 51.4
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 1.1e-06 56.6 37 75.7
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 1.4e-06 56.2 71 53.5
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.8e-06 55.8 67 56.7
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 1.8e-06 55.8 69 53.6
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 1.8e-06 55.8 71 53.5
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 1.8e-06 55.8 35 77.1
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 5.4e-06 54.3 41 70.7
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 9.2e-06 53.5 69 55.1
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 9.2e-06 53.5 53 62.3
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 9.2e-06 53.5 59 59.3


User provided reference genes

Program Settings