Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 7.4e-237 823.5 433 100.0
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 8.2e-228 793.5 433 94.9
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.6e-199 699.5 433 79.2
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 9.1e-195 683.7 433 78.1
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 3.2e-192 675.2 436 78.2
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.6e-191 672.9 445 74.2
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 4.7e-191 671.4 434 77.2
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 6.7e-190 667.5 434 76.3
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 1.5e-189 666.4 435 78.4
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.6e-189 665.6 434 76.0
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 2.7e-186 655.6 435 75.6
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.3e-180 636.7 435 76.1
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.2e-172 609.4 434 72.4
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 2.2e-172 609.4 434 68.9
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.8e-172 609.0 435 68.7
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 5.4e-171 604.7 434 71.9
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 4.5e-170 601.7 434 74.9
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.3e-169 600.1 434 68.0
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 5.0e-169 598.2 434 69.6
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 2.1e-167 592.8 429 71.8
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 1.4e-166 590.1 318 87.1
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.4e-166 590.1 431 67.1
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.4e-166 590.1 429 67.8
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.3e-166 589.3 439 67.2
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.1e-166 589.0 434 67.3
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 5.2e-166 588.2 434 67.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 6.8e-166 587.8 434 66.6
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.0e-165 586.3 434 66.8
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 2.6e-165 585.9 435 67.6
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 7.5e-165 584.3 435 66.9
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 7.5e-165 584.3 434 71.2
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.7e-164 583.2 431 67.3
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 1.4e-163 580.1 433 72.5
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 2.4e-163 579.3 422 67.5
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 3.0e-161 572.4 432 66.4
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.5e-160 569.3 432 67.8
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 9.5e-160 567.4 440 65.7
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 9.5e-160 567.4 431 68.9
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 9.5e-160 567.4 431 69.4
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 2.1e-159 566.2 434 63.8
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 2.8e-159 565.8 434 63.4
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 1.4e-158 563.5 434 64.1
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.5e-157 560.1 432 64.6
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 1.5e-157 560.1 435 64.6
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 2.6e-157 559.3 431 66.4
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 4.4e-157 558.5 432 63.4
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 2.2e-156 556.2 434 62.4
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 6.4e-156 554.7 434 62.7
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.9e-155 553.1 492 62.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 3.2e-155 552.4 431 62.4
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 3.2e-155 552.4 433 64.0
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 4.1e-155 552.0 431 61.9
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 5.4e-155 551.6 431 62.4
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 1.6e-154 550.1 399 69.2
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 3.5e-154 548.9 428 65.4
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 4.6e-154 548.5 431 62.2
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 4.6e-154 548.5 431 62.6
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.9e-153 545.4 395 71.1
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 3.9e-153 545.4 431 61.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 5.1e-153 545.0 428 64.3
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 6.6e-153 544.7 431 61.5
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 8.6e-153 544.3 428 67.5
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 3.3e-152 542.3 433 62.4
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 5.6e-152 541.6 431 61.3
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 5.6e-152 541.6 430 62.8
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.6e-151 540.0 433 62.1
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 2.1e-151 539.7 417 61.6
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 2.1e-151 539.7 433 62.1
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.1e-150 537.3 431 67.1
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.1e-150 537.3 456 60.3
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.4e-150 537.0 442 67.2
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 3.1e-150 535.8 434 62.4
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 2.6e-149 532.7 434 63.4
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 5.8e-149 531.6 430 63.3
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 7.5e-149 531.2 343 75.2
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 9.9e-149 530.8 462 63.9
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.3e-148 530.4 434 61.8
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.9e-148 529.3 431 59.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 3.7e-148 528.9 430 63.5
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 3.7e-148 528.9 434 60.8
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 6.4e-148 528.1 431 62.6
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.1e-147 525.4 430 63.3
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.2e-146 523.9 445 63.8
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 9.5e-144 514.2 437 59.7
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-142 510.0 470 56.2
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 2.0e-141 506.5 496 54.8
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 7.6e-141 504.6 433 58.2
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.7e-140 503.4 396 63.9
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.9e-140 501.9 396 65.4
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 5.4e-139 498.4 397 63.5
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 8.7e-137 491.1 341 69.5
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 1.5e-136 490.3 449 57.0
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 1.6e-135 486.9 434 58.1
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 9.6e-128 461.1 301 70.4
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.6e-127 460.3 300 72.7
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.1e-126 457.6 309 70.9
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 4.0e-126 455.7 347 62.8
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 4.5e-125 452.2 431 59.2
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.1e-123 447.6 329 66.3
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 2.4e-123 446.4 424 55.4
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 3.0e-121 439.5 430 54.4
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.6e-119 433.7 345 64.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 4.8e-119 432.2 316 66.8
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.2e-114 417.5 427 50.1
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.3e-113 414.1 437 49.9
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.8e-113 413.7 416 50.0
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.8e-113 413.7 444 54.3
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.4e-110 404.1 418 48.1
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.9e-102 375.2 329 59.0
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.9e-94 348.6 306 57.8
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 9.4e-91 338.2 316 53.5
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 4.7e-90 335.9 277 61.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 7.0e-78 295.4 276 66.7
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 8.8e-73 278.5 183 67.8
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.5e-72 277.7 343 41.1
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 2.1e-66 257.3 229 53.7
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 4.9e-63 246.1 376 39.6
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.7e-60 237.7 421 36.6
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 5.7e-56 222.6 479 31.9
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 9.2e-46 188.7 271 44.6
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.0e-44 185.3 202 48.5
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.9e-44 183.3 129 68.2
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.8e-41 174.5 119 71.4
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.2e-37 161.8 120 66.7
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.3e-36 158.3 117 65.8
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 4.7e-26 123.2 154 44.8
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 4.9e-23 113.2 251 34.7
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.4e-22 110.9 137 49.6
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 2.5e-19 100.9 107 46.7
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.3e-12 78.6 60 63.3
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 2.5e-11 74.3 128 37.5
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.8e-07 60.5 72 47.2
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 4.9e-07 60.1 39 66.7


User provided reference genes

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