Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 3.6e-130 468.4 258 100.0
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 1.8e-113 412.9 258 81.8
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 2.9e-103 379.0 216 85.2
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 6.2e-98 361.3 258 72.1
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 1.2e-96 357.1 213 88.7
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 1.7e-95 353.2 218 78.9
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 1.7e-95 353.2 218 78.9
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 2.9e-95 352.4 216 76.4
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 9.2e-94 347.4 219 75.8
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 1.0e-92 344.0 214 78.0
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 8.6e-92 340.9 222 75.2
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 2.8e-90 335.9 216 76.9
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 3.7e-87 325.5 217 74.2
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 7.3e-83 311.2 230 70.9
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 9.6e-83 310.8 227 71.4
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 1.2e-82 310.5 240 67.9
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 2.1e-82 309.7 228 71.1
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 3.6e-82 308.9 218 68.8
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 6.2e-82 308.1 216 67.6
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 1.1e-81 307.4 220 69.1
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 3.1e-81 305.8 218 67.9
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 8.9e-81 304.3 218 67.9
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 8.9e-81 304.3 218 67.9
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 4.4e-80 302.0 216 68.1
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 5.8e-80 301.6 219 69.9
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 2.2e-79 299.7 217 65.9
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 7.1e-78 294.7 226 64.2
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 2.7e-77 292.7 260 57.7
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.7e-76 290.0 222 64.9
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 2.3e-76 289.7 217 66.8
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 2.3e-76 289.7 179 75.4
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 3.9e-76 288.9 175 76.0
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 5.1e-76 288.5 222 64.4
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 1.1e-75 287.3 252 58.3
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 1.1e-75 287.3 227 66.5
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.9e-75 286.6 223 63.2
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 3.3e-75 285.8 218 65.6
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 5.6e-75 285.0 229 63.3
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 1.8e-73 280.0 226 61.5
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 2.6e-72 276.2 222 64.4
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 4.4e-72 275.4 225 64.9
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 2.1e-69 266.5 200 68.5
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 2.7e-69 266.2 213 67.1
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 3.5e-69 265.8 179 73.7
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 1.0e-68 264.2 179 73.7
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 1.7e-68 263.5 220 60.5
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 5.6e-67 258.5 220 55.5
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 8.1e-66 254.6 203 63.5
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 1.8e-65 253.4 218 57.3
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 9.0e-65 251.1 153 78.4
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 1.2e-64 250.8 221 60.2
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 5.8e-64 248.4 206 60.2
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 3.8e-63 245.7 239 53.1
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 4.2e-62 242.3 242 51.7
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 7.1e-62 241.5 220 57.3
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.6e-61 240.4 210 56.2
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 6.0e-61 238.4 222 56.3
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 1.3e-60 237.3 220 56.4
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 1.8e-60 236.9 226 57.1
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 3.9e-60 235.7 220 56.4
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 8.7e-60 234.6 222 56.8
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 8.7e-60 234.6 222 56.8
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 8.7e-60 234.6 222 56.8
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 1.5e-59 233.8 219 57.1
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 3.3e-59 232.6 219 56.6
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 3.3e-59 232.6 219 56.6
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 3.3e-59 232.6 219 53.4
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 4.3e-59 232.3 219 53.9
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 7.4e-59 231.5 219 56.2
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 7.4e-59 231.5 219 56.2
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 1.3e-58 230.7 221 55.2
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.2e-56 224.2 199 57.3
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.6e-56 223.0 199 57.3
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 6.5e-55 218.4 149 69.8
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 2.5e-54 216.5 217 51.2
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 6.0e-53 211.8 154 63.6
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 3.0e-52 209.5 170 61.2
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.1e-51 207.6 210 51.0
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 9.6e-51 204.5 214 50.5
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 4.8e-50 202.2 225 50.2
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 9.0e-49 198.0 312 37.5
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 2.0e-48 196.8 218 48.6
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 3.4e-48 196.1 155 60.6
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 3.4e-48 196.1 215 49.3
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 1.0e-47 194.5 174 54.6
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 3.2e-46 189.5 255 42.7
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 6.1e-45 185.3 258 41.9
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 3.9e-44 182.6 144 61.1
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 4.3e-43 179.1 127 65.4
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 4.8e-42 175.6 216 43.5
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 6.3e-42 175.3 152 59.2
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 6.9e-41 171.8 220 44.5
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 9.0e-41 171.4 220 45.0
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.4e-40 169.5 275 35.6
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 1.7e-39 167.2 220 40.0
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 1.7e-39 167.2 145 64.1
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.9e-39 166.4 145 63.4
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 6.5e-39 165.2 140 64.3
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 8.5e-39 164.9 145 62.1
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 1.1e-38 164.5 134 63.4
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 3.2e-38 162.9 136 64.7
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 4.2e-38 162.5 140 57.9
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 7.2e-38 161.8 140 59.3
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 7.2e-38 161.8 140 60.7
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 2.1e-37 160.2 140 57.1
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 6.1e-37 158.7 141 57.4
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 1.4e-36 157.5 142 60.6
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 2.5e-35 153.3 139 54.0
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 4.8e-34 149.1 138 55.1
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 1.1e-33 147.9 228 40.4
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 4.5e-32 142.5 154 53.2
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 6.1e-29 132.1 146 48.6
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 1.5e-27 127.5 257 33.9
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 2.0e-27 127.1 110 60.9
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 1.7e-23 114.0 69 73.9
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 1.7e-23 114.0 137 47.4
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 2.5e-22 110.2 104 48.1
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 1.7e-10 70.9 79 40.5
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 1.4e-09 67.8 83 41.0
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 1.0e-07 61.6 111 30.6


User provided reference genes

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