Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 2.9e-159 565.1 264 100.0
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 1.1e-150 536.6 267 93.3
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 6.0e-149 530.8 261 92.7
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.7e-148 529.3 261 91.6
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 3.6e-146 521.5 261 91.2
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.2e-144 516.5 262 89.7
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 8.4e-143 510.4 265 88.3
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 8.4e-143 510.4 265 88.3
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 3.5e-141 505.0 265 86.8
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.1e-138 495.7 264 83.0
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 2.4e-137 492.3 261 85.4
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 6.9e-137 490.7 262 84.4
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 1.6e-133 479.6 262 82.4
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 2.1e-133 479.2 264 81.8
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 2.1e-133 479.2 264 81.4
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 3.5e-133 478.4 265 82.6
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.8e-132 476.1 257 83.7
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 1.8e-132 476.1 262 82.1
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.8e-132 476.1 267 82.0
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 3.0e-132 475.3 263 82.5
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 6.7e-132 474.2 262 81.7
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.7e-131 471.1 262 80.9
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 5.7e-131 471.1 264 81.1
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.6e-130 469.5 264 80.7
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.6e-130 469.5 256 82.4
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.6e-130 469.5 271 80.4
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 4.8e-130 468.0 268 79.5
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.1e-129 466.8 263 80.6
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 1.4e-129 466.5 264 79.2
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.8e-129 466.1 265 80.4
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.8e-129 466.1 263 81.0
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.4e-129 465.7 264 79.2
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 3.1e-129 465.3 260 81.5
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 5.3e-129 464.5 266 80.1
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 6.9e-129 464.2 262 80.5
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 6.9e-129 464.2 264 78.8
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-128 463.4 264 80.7
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 1.2e-128 463.4 263 80.6
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 3.4e-128 461.8 263 79.8
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 1.7e-127 459.5 264 76.9
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 2.2e-127 459.1 260 77.3
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.4e-126 456.4 263 78.7
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 2.5e-126 455.7 253 81.0
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 2.5e-126 455.7 266 77.1
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.5e-126 455.7 271 79.0
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.5e-126 455.7 257 81.3
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 4.2e-126 454.9 264 79.9
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 4.2e-126 454.9 262 78.2
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 5.5e-126 454.5 271 78.6
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 9.3e-126 453.8 271 77.5
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 9.3e-126 453.8 266 76.7
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 9.3e-126 453.8 269 78.1
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.6e-125 453.0 271 78.6
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 6.1e-125 451.1 257 80.5
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 1.0e-124 450.3 269 76.2
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.0e-124 450.3 263 77.9
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.8e-124 449.5 257 80.2
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 3.0e-124 448.7 269 75.8
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 3.9e-124 448.4 269 75.8
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 3.9e-124 448.4 265 77.7
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 5.1e-124 448.0 269 75.8
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 5.1e-124 448.0 263 77.6
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 8.7e-124 447.2 266 76.3
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 8.7e-124 447.2 268 75.4
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.3e-123 445.3 265 78.9
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 9.7e-123 443.7 265 75.5
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 2.8e-122 442.2 270 76.7
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 3.7e-122 441.8 269 74.7
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 4.8e-122 441.4 263 76.8
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 8.2e-122 440.7 263 77.2
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.1e-121 440.3 263 77.2
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.1e-121 440.3 256 77.7
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.4e-121 439.9 262 76.0
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.4e-121 439.1 268 76.9
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 3.1e-121 438.7 263 76.8
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 6.9e-121 437.6 267 74.5
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 1.2e-120 436.8 267 75.3
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 1.5e-120 436.4 258 76.4
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 2.0e-120 436.0 262 75.6
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.4e-120 435.3 277 71.8
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 2.9e-119 432.2 266 74.4
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.8e-119 431.8 256 75.8
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 8.5e-119 430.6 266 74.1
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 8.5e-119 430.6 250 77.6
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 4.2e-118 428.3 267 73.0
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 1.6e-117 426.4 266 73.7
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.1e-117 426.0 269 73.2
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 2.3e-116 422.5 266 71.8
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 2.3e-116 422.5 266 72.6
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 2.3e-116 422.5 263 73.8
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.0e-116 422.2 236 79.7
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.9e-116 421.8 287 67.6
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 8.8e-116 420.6 250 75.6
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.0e-115 419.5 285 68.1
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.0e-115 419.5 256 72.3
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 5.7e-115 417.9 261 70.9
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 3.1e-113 412.1 256 74.6
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 5.3e-113 411.4 262 74.0
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 6.9e-113 411.0 266 71.8
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 1.5e-112 409.8 261 73.2
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.5e-112 409.8 279 67.0
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 5.9e-112 407.9 291 65.6
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 6.5e-111 404.4 231 74.5
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 2.5e-110 402.5 297 65.7
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.2e-109 400.2 242 73.6
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 3.6e-109 398.7 210 85.2
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 3.6e-109 398.7 271 71.2
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 3.9e-108 395.2 270 69.6
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 3.9e-108 395.2 231 72.7
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 6.7e-108 394.4 235 76.6
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 1.5e-107 393.3 193 91.2
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 2.8e-106 389.0 235 74.9
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.3e-103 380.2 219 77.2
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.7e-101 372.5 222 74.8
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.3e-100 369.4 264 65.2
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 4.0e-100 368.6 249 64.3
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 7.5e-99 364.4 232 67.2
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.0e-97 357.8 234 65.8
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 4.5e-96 355.1 218 68.3
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 7.7e-96 354.4 222 67.1
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.1e-94 350.5 250 66.8
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 3.2e-94 349.0 231 70.6
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.6e-93 346.7 288 58.3
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.0e-88 329.7 334 51.2
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 5.5e-86 321.6 164 84.8
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.1e-85 319.7 288 56.2
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 9.8e-83 310.8 198 68.7
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 4.1e-81 305.4 162 84.6
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 2.7e-80 302.8 215 60.0
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 5.0e-79 298.5 181 74.0
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.0e-71 272.7 163 78.5
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 8.9e-68 261.2 154 77.3
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.4e-66 255.0 138 81.9
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 1.8e-60 236.9 194 59.3
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.3e-58 230.7 215 53.5
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.5e-51 207.2 126 74.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 8.4e-50 201.4 120 72.5
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 7.6e-35 151.8 105 70.5
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 2.8e-29 133.3 82 78.0
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.5e-27 125.9 82 73.2
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 8.4e-26 121.7 91 71.4
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.4e-25 120.2 68 72.1
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 5.5e-25 119.0 72 76.4
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 8.7e-23 111.7 65 69.2
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 5.6e-22 109.0 66 72.7
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 1.7e-18 97.4 52 78.8
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.2e-16 91.3 71 64.8
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 2.1e-16 90.5 85 55.3
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 7.9e-16 88.6 84 52.4
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 4.3e-14 82.8 43 76.7
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 3.7e-13 79.7 70 60.0
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 2.0e-11 73.9 56 62.5
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.2e-10 70.5 50 68.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.9e-10 70.1 56 57.1
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.7e-07 58.9 67 43.3
BolC3t14316H Brassica oleracea HOM05D001551 ORTHO05D042173 2.5e-06 57.0 49 49.0


User provided reference genes

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