Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 0.0e+00 1788.5 899 100.0
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 0.0e+00 1532.3 908 86.1
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 0.0e+00 1332.4 912 76.3
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 0.0e+00 1324.7 909 76.2
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 0.0e+00 1317.0 916 74.9
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 0.0e+00 1312.7 917 74.2
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 0.0e+00 1300.8 917 74.6
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 0.0e+00 1297.3 924 73.5
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 0.0e+00 1289.6 912 73.0
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 0.0e+00 1082.0 930 64.6
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 0.0e+00 1081.6 930 64.5
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 0.0e+00 1075.5 934 60.9
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 7.4e-308 1060.4 916 61.9
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 4.5e-305 1051.2 905 61.8
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 1.4e-303 1046.2 924 60.8
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 7.4e-300 1033.9 910 60.8
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 2.2e-299 1032.3 918 60.3
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.6e-294 1016.1 920 59.0
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.7e-294 1015.4 917 60.1
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 3.0e-293 1011.9 931 59.0
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 3.3e-292 1008.4 919 59.0
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 4.4e-292 1008.1 916 59.6
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 9.7e-292 1006.9 908 58.5
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.4e-290 1003.0 908 58.7
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.2e-289 1000.0 919 58.9
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 2.0e-289 999.2 912 58.0
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 2.0e-289 999.2 916 58.7
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 2.6e-284 982.2 931 56.7
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 9.8e-284 980.3 921 58.3
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 3.7e-283 978.4 919 58.0
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 6.6e-280 967.6 924 58.4
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 5.5e-279 964.5 914 59.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.2e-278 963.4 923 57.7
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 4.0e-277 958.4 812 63.2
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 8.9e-277 957.2 908 57.3
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 3.4e-276 955.3 919 57.2
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 4.3e-271 938.3 904 56.1
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 4.7e-270 934.9 991 53.8
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 9.8e-268 927.2 928 56.1
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 3.0e-264 915.6 925 53.6
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 3.9e-264 915.2 884 56.1
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 5.6e-263 911.4 848 59.3
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 1.8e-261 906.4 924 53.4
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 5.8e-260 901.4 925 53.2
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 3.7e-259 898.7 910 53.6
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 4.9e-259 898.3 910 53.7
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 1.1e-258 897.1 932 54.1
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.9e-258 896.3 909 53.8
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 3.2e-258 895.6 939 54.4
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 1.1e-255 887.1 912 53.5
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.5e-255 886.7 904 54.3
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.9e-255 886.3 721 64.8
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 2.1e-254 882.9 930 51.9
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 3.6e-254 882.1 911 52.5
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 6.2e-254 881.3 926 52.9
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 5.8e-252 874.8 927 52.4
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.3e-248 863.6 951 51.0
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 5.1e-248 861.7 915 51.5
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 1.1e-247 860.5 929 50.1
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 5.8e-244 848.2 900 51.4
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 7.6e-244 847.8 907 51.3
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 2.9e-243 845.9 900 51.6
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.2e-241 840.5 902 50.7
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.1e-241 839.7 925 51.8
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 8.7e-240 834.3 895 52.0
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 4.7e-238 828.6 681 64.2
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 8.1e-238 827.8 899 50.6
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 1.6e-233 813.5 460 88.9
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 4.6e-233 812.0 906 51.0
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.1e-231 807.4 904 50.2
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 2.5e-231 806.2 907 49.6
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 3.3e-231 805.8 922 50.2
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.1e-229 800.8 920 49.7
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 9.0e-229 797.7 707 59.7
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 9.0e-229 797.7 922 48.5
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 2.0e-228 796.6 919 49.2
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.6e-225 786.9 918 49.1
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 8.7e-224 781.2 1067 45.1
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 5.6e-223 778.5 895 49.3
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.3e-222 777.3 1146 41.8
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 4.8e-222 775.4 915 49.3
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 3.4e-220 769.2 948 47.7
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 3.2e-218 762.7 462 85.1
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 5.5e-218 761.9 411 93.7
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 2.3e-216 756.5 741 54.7
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 4.0e-213 745.7 911 47.0
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.6e-212 743.0 921 47.8
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 3.4e-212 742.7 934 47.2
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.2e-209 734.2 918 47.7
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 5.1e-208 728.8 748 53.3
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 6.9e-205 718.4 898 45.4
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 9.4e-202 708.0 497 71.0
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 1.7e-198 697.2 910 44.2
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 2.2e-198 696.8 897 45.9
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 5.5e-194 682.2 838 47.4
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 2.6e-188 663.3 918 42.6
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 1.3e-187 661.0 704 52.1
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 2.4e-181 640.2 894 45.2
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 9.1e-181 638.3 551 61.3
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 4.5e-180 636.0 676 51.9
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 5.5e-170 602.4 642 53.9
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.1e-169 599.0 446 68.2
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 9.8e-159 565.1 482 59.8
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 5.4e-149 532.7 961 36.1
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 5.4e-149 532.7 909 39.8
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 6.6e-131 472.6 524 51.0
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 3.6e-129 466.8 916 34.3
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-119 435.3 479 52.2
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 4.9e-118 429.9 485 51.1
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 5.1e-107 393.3 396 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 1.5e-103 381.7 484 42.8
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-101 375.2 359 57.1
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 6.7e-99 366.3 322 60.2
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 2.5e-93 347.8 255 68.2
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 5.7e-90 336.7 460 44.6
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 4.8e-89 333.6 823 31.0
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-87 328.9 418 47.4
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.5e-87 328.6 222 71.6
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.5e-87 328.6 222 71.6
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.9e-86 324.3 474 43.9
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-84 318.2 390 49.0
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 7.4e-82 309.7 301 54.2
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 2.0e-79 301.6 280 60.0
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 3.6e-76 290.8 528 35.0
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 8.8e-75 286.2 322 50.9
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 2.4e-72 278.1 606 35.3
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.1e-60 236.9 245 56.7
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 1.0e-59 236.1 345 43.5
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.0e-59 236.1 512 32.2
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.0e-59 236.1 458 35.8
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.7e-55 219.9 244 51.2
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.7e-50 203.8 239 45.6
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 4.5e-47 194.1 483 29.0
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.0e-46 193.0 380 34.2
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.7e-44 184.1 170 53.5
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.2e-42 179.5 243 44.9
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.9e-39 167.2 107 72.9
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.2e-36 159.5 137 53.3
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.3e-35 155.2 169 50.9
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 2.3e-35 155.2 169 50.9
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 1.9e-32 145.6 191 45.0
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 3.6e-28 131.3 146 52.7
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 4.7e-28 131.0 230 37.0
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 4.0e-27 127.9 169 46.7
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-26 126.3 169 46.2
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.7e-25 122.5 194 40.2
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.2e-20 106.3 78 69.2
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 3.1e-19 101.7 158 45.6
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 5.2e-19 100.9 144 37.5
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 6.4e-17 94.0 115 42.6
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.9e-16 92.4 75 58.7
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 9.2e-16 90.1 79 60.8
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.2e-15 89.7 869 20.3
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.5e-13 82.0 200 32.5
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 4.3e-13 81.3 104 43.3
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.6e-10 72.0 169 33.7
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.8e-09 68.2 45 66.7
QL05p081774 Quercus lobata HOM05D004183 ORTHO05D005022 1.3e-06 59.7 96 38.5


User provided reference genes

Program Settings