Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 1.3e-53 213.0 120 100.0
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 2.4e-44 182.2 120 88.3
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 6.5e-42 174.1 125 80.8
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 5.5e-41 171.0 125 80.8
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 8.2e-37 157.1 122 79.5
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 3.8e-34 148.3 120 74.2
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 1.1e-33 146.7 125 74.4
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 5.5e-33 144.4 127 66.1
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 2.3e-31 139.0 123 68.3
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.9e-31 138.3 122 72.1
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.9e-31 138.3 122 72.1
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 2.4e-28 129.0 97 78.4
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 4.5e-27 124.8 127 66.1
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 4.5e-19 98.2 101 55.4
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 5.9e-19 97.8 78 79.5
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 6.5e-18 94.4 71 64.8
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 8.5e-18 94.0 108 68.5
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 1.9e-17 92.8 75 64.0
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 2.5e-17 92.4 81 61.7
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 5.5e-17 91.3 78 60.3
VMungo1309G1684 Vigna mungo HOM05D006246 ORTHO05D007932 5.5e-17 91.3 121 58.7
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 7.2e-17 90.9 78 60.3
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 9.4e-17 90.5 80 58.8
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 2.1e-16 89.4 78 61.5
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.1e-16 89.4 73 63.0
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 2.1e-16 89.4 81 60.5
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 2.7e-16 89.0 81 59.3
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 2.7e-16 89.0 81 59.3
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 2.7e-16 89.0 77 62.3
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 4.7e-16 88.2 47 87.2
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 4.7e-16 88.2 81 60.5
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 6.1e-16 87.8 77 61.0
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 1.0e-15 87.0 78 60.3
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 2.3e-15 85.9 85 56.5
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 3.0e-15 85.5 41 92.7
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 5.2e-15 84.7 44 86.4
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 5.2e-15 84.7 44 86.4
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 5.2e-15 84.7 44 86.4
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 6.8e-15 84.3 85 56.5
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 6.8e-15 84.3 78 62.8
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 8.8e-15 84.0 77 58.4
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 8.8e-15 84.0 60 73.3
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 1.2e-14 83.6 70 62.9
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 1.5e-14 83.2 44 84.1
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 1.5e-14 83.2 94 50.0
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 2.0e-14 82.8 84 70.2
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 2.6e-14 82.4 45 84.4
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 4.4e-14 81.6 83 71.1
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 4.4e-14 81.6 83 71.1
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 4.4e-14 81.6 78 57.7
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 5.7e-14 81.3 56 71.4
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 5.7e-14 81.3 127 52.8
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 5.7e-14 81.3 76 57.9
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 7.5e-14 80.9 87 55.2
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 7.5e-14 80.9 111 46.8
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 7.5e-14 80.9 47 80.9
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 9.8e-14 80.5 42 88.1
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 9.8e-14 80.5 37 97.3
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 1.7e-13 79.7 86 54.7
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 1.7e-13 79.7 44 84.1
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 1.7e-13 79.7 44 84.1
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 1.7e-13 79.7 44 84.1
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 2.2e-13 79.3 67 64.2
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 2.8e-13 79.0 41 85.4
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 3.7e-13 78.6 47 80.9
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 3.7e-13 78.6 67 65.7
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 6.3e-13 77.8 66 62.1
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 6.3e-13 77.8 36 94.4
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 1.1e-12 77.0 43 81.4
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 1.4e-12 76.6 43 83.7
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.4e-12 75.9 66 63.6
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 3.1e-12 75.5 43 81.4
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 4.1e-12 75.1 46 71.7
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 5.4e-12 74.7 46 78.3
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 5.4e-12 74.7 45 73.3
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 5.4e-12 74.7 45 73.3
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 7.0e-12 74.3 45 73.3
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 7.0e-12 74.3 35 91.4
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 7.0e-12 74.3 46 73.9
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 7.0e-12 74.3 34 94.1
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 9.1e-12 73.9 63 63.5
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 9.1e-12 73.9 43 74.4
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 1.2e-11 73.6 44 77.3
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 3.5e-11 72.0 35 91.4
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.5e-11 72.0 65 60.0
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 4.5e-11 71.6 43 74.4
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 4.5e-11 71.6 41 82.9
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 4.5e-11 71.6 60 60.0
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 1.0e-10 70.5 41 80.5
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 1.3e-10 70.1 93 46.2
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.9e-10 68.9 41 78.0
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 5.0e-10 68.2 51 66.7
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 5.0e-10 68.2 38 76.3
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 1.5e-09 66.6 70 52.9
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 1.5e-09 66.6 34 88.2
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.1e-08 62.8 74 56.8
PRCOL_00001132 Prasinoderma coloniale HOM05D006246 ORTHO05D007932 2.8e-08 62.4 54 59.3
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 4.0e-07 58.5 37 70.3
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 2.0e-06 56.2 114 36.0
AT2G31305 Arabidopsis thaliana HOM05D006246 ORTHO05D007932 3.4e-06 55.5 61 54.1
Pp3c16_16780 Physcomitrium patens HOM05D006246 ORTHO05D007932 7.5e-06 54.3 72 45.8
AL4G26530 Arabidopsis lyrata HOM05D006246 ORTHO05D007932 9.8e-06 53.9 60 53.3
BcaB06g28525 Brassica carinata HOM05D006246 ORTHO05D007932 9.8e-06 53.9 82 46.3
BolC4t27573H Brassica oleracea HOM05D006246 ORTHO05D007932 9.8e-06 53.9 82 46.3


User provided reference genes

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