Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.5e-101 372.9 183 100.0
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 7.2e-85 317.4 183 87.4
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.2e-84 316.6 183 85.8
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 4.4e-74 281.6 183 74.9
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 3.3e-69 265.4 183 73.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 7.5e-66 254.2 184 69.0
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.7e-65 253.1 183 68.3
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 2.2e-65 252.7 181 67.4
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.1e-64 250.4 183 67.8
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 7.0e-64 247.7 181 68.0
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 7.0e-64 247.7 184 66.3
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 9.2e-64 247.3 184 67.9
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-63 246.9 184 65.8
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.2e-63 246.9 182 64.8
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.6e-63 246.5 184 65.8
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 7.8e-63 244.2 184 65.2
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.0e-62 243.8 183 63.4
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.3e-62 243.4 183 67.8
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 6.6e-62 241.1 187 63.1
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.1e-61 240.4 191 65.4
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.6e-60 236.5 184 64.1
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.6e-60 236.5 187 62.6
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.1e-60 236.1 184 63.0
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 2.1e-60 236.1 187 62.0
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.1e-60 236.1 184 63.6
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.1e-60 236.1 184 63.6
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.1e-60 236.1 187 62.0
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 2.8e-60 235.7 190 61.6
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 6.2e-60 234.6 185 62.2
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 8.1e-60 234.2 184 62.5
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.3e-59 232.6 183 62.3
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 3.1e-59 232.3 187 62.0
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.2e-59 231.5 186 61.8
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.5e-58 229.9 185 60.0
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.5e-58 229.9 190 62.6
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 2.6e-58 229.2 183 66.1
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 2.6e-58 229.2 187 62.6
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 4.4e-58 228.4 189 59.8
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 4.4e-58 228.4 185 61.6
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.8e-58 228.0 189 59.3
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.7e-57 226.5 151 71.5
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 2.9e-57 225.7 184 62.0
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 3.7e-57 225.3 183 60.7
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 3.7e-57 225.3 184 61.4
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 3.7e-57 225.3 190 60.0
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 4.9e-57 224.9 189 59.8
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 8.3e-57 224.2 190 61.6
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 8.3e-57 224.2 185 60.5
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.1e-56 223.8 191 61.3
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.1e-56 223.8 184 60.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.1e-56 223.8 186 61.3
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.4e-56 223.4 184 60.9
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.9e-56 223.0 189 59.8
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.9e-56 223.0 224 51.8
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.9e-56 223.0 191 61.3
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 2.4e-56 222.6 185 60.0
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 4.1e-56 221.9 189 60.3
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.1e-56 221.9 184 60.3
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 4.1e-56 221.9 184 59.8
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 5.4e-56 221.5 188 59.6
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.4e-56 221.5 184 60.3
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 7.1e-56 221.1 184 61.4
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 9.2e-56 220.7 180 62.8
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.2e-55 220.3 184 60.9
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.1e-55 219.5 180 61.7
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.7e-55 219.2 184 60.3
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.7e-55 219.2 182 59.9
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 3.5e-55 218.8 191 58.6
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 4.6e-55 218.4 225 51.6
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 4.6e-55 218.4 164 64.0
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 4.6e-55 218.4 183 59.6
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.0e-54 217.2 184 59.8
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.3e-54 216.9 188 59.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-54 216.9 191 59.2
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.3e-54 216.9 189 59.3
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.3e-54 216.9 197 55.8
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.3e-54 216.1 193 57.0
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.0e-54 215.7 189 58.7
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.0e-54 215.7 145 69.0
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 5.1e-54 214.9 185 58.4
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.1e-53 213.8 190 59.5
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.1e-53 213.8 190 56.3
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.1e-53 213.8 185 56.8
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 1.9e-53 213.0 185 58.9
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.1e-52 209.5 185 58.9
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.8e-52 209.1 195 54.4
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 3.6e-52 208.8 184 56.0
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.7e-52 208.4 189 54.5
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 8.1e-52 207.6 192 54.2
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.1e-51 207.2 192 57.3
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.4e-51 206.8 183 55.7
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.4e-51 206.8 184 53.8
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 1.4e-51 206.8 169 58.6
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.8e-51 206.5 206 52.9
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.8e-51 206.5 187 57.8
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.8e-51 206.5 140 65.7
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 2.4e-51 206.1 183 56.3
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 3.1e-51 205.7 184 56.0
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 4.0e-51 205.3 163 60.1
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 4.0e-51 205.3 142 66.2
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 4.0e-51 205.3 193 56.0
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 4.0e-51 205.3 187 57.2
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 5.2e-51 204.9 143 65.0
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 6.8e-51 204.5 189 57.7
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 6.8e-51 204.5 130 69.2
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.2e-50 203.8 198 56.1
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.5e-50 203.4 248 46.0
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.0e-50 203.0 147 64.6
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.0e-50 203.0 184 54.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.7e-49 199.9 191 55.5
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.4e-48 196.8 196 53.1
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.9e-48 196.4 159 61.6
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.4e-48 196.1 214 49.5
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.2e-47 193.7 160 61.2
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 2.7e-47 192.6 115 72.2
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 3.5e-47 192.2 134 64.9
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 4.6e-47 191.8 272 42.3
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.3e-46 190.3 183 55.7
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 8.7e-46 187.6 161 57.1
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 3.3e-45 185.7 117 69.2
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 4.0e-43 178.7 163 56.4
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-41 173.7 140 60.0
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.3e-38 162.9 123 59.3
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 8.7e-38 161.0 118 62.7
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 1.5e-37 160.2 151 60.3
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 9.6e-37 157.5 124 57.3
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 3.1e-35 152.5 125 52.8
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.3e-33 147.1 87 71.3
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.3e-33 147.1 90 75.6
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.3e-28 130.6 72 80.6
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 2.1e-28 129.8 115 60.9
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.1e-28 127.9 86 66.3
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.4e-27 127.1 92 65.2
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.5e-26 123.6 133 45.9
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.5e-26 123.6 132 54.5
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 8.4e-25 117.9 72 66.7
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 8.4e-25 117.9 78 61.5
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 3.0e-22 109.4 65 67.7
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 7.6e-18 94.7 60 66.7
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.3e-17 94.0 124 36.3
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.9e-17 92.8 102 40.2
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 6.7e-14 81.6 87 55.2
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 5.9e-10 68.6 35 82.9
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 3.9e-06 55.8 94 31.9


User provided reference genes

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