Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 0.0e+00 1350.5 677 100.0
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 0.0e+00 1156.0 696 86.2
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.5e-297 1025.8 722 74.8
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 6.5e-248 860.9 717 64.4
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 5.9e-241 837.8 711 63.6
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 6.5e-240 834.3 714 62.6
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 2.1e-238 829.3 714 62.2
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 1.3e-235 820.1 708 62.9
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 1.7e-235 819.7 715 62.7
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.4e-234 816.6 753 59.9
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 5.3e-234 814.7 716 62.6
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 3.0e-229 798.9 713 60.6
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.5e-228 796.6 715 60.8
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 8.6e-224 780.8 718 59.6
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 6.1e-222 774.6 717 58.0
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 4.5e-217 758.4 712 56.9
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 7.3e-215 751.1 727 56.8
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.2e-214 750.4 722 56.8
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 1.0e-208 730.7 685 56.9
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 3.3e-207 725.7 713 55.3
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.6e-206 722.2 726 55.2
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 4.7e-206 721.8 704 56.2
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 2.0e-204 716.5 704 55.1
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.7e-203 713.4 704 55.4
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.7e-203 713.4 704 55.4
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 8.3e-203 711.1 722 54.2
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 8.3e-203 711.1 725 53.2
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.1e-202 710.7 722 54.2
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.0e-202 708.0 703 54.5
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 1.6e-201 706.8 735 52.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.5e-199 700.3 723 52.7
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.5e-199 700.3 729 53.4
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 7.3e-199 698.0 711 53.3
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 2.8e-198 696.0 721 52.6
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 6.2e-198 694.9 729 52.4
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 6.2e-198 694.9 704 53.7
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 1.1e-197 694.1 728 51.8
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 3.1e-197 692.6 704 53.3
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 4.0e-197 692.2 636 60.2
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.6e-196 689.5 730 52.6
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.6e-196 689.5 724 52.3
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.7e-195 686.8 723 52.3
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 2.7e-193 679.5 724 52.1
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 6.0e-193 678.3 733 51.7
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.0e-192 677.6 723 51.6
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.3e-192 677.2 718 52.5
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.2e-190 670.6 726 51.1
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.2e-190 670.6 716 52.5
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.8e-190 669.5 715 50.9
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 6.2e-190 668.3 731 51.2
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 8.1e-190 667.9 706 51.6
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.8e-189 666.8 710 51.4
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.6e-188 662.9 700 53.1
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 4.4e-188 662.1 698 51.3
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 4.4e-188 662.1 715 52.4
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.2e-185 654.1 709 50.5
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.0e-185 651.7 721 52.0
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 8.1e-182 641.3 700 50.9
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.8e-181 640.2 705 49.1
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 6.9e-181 638.3 748 48.0
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.6e-180 636.3 709 49.6
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.4e-180 636.0 732 49.7
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 4.2e-178 629.0 705 49.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.6e-177 627.1 682 51.0
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.6e-177 627.1 736 49.2
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 1.3e-174 617.5 722 47.5
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 2.1e-174 616.7 701 49.8
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 6.2e-174 615.1 717 48.7
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.1e-173 614.4 724 48.8
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.4e-172 609.4 724 48.3
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 7.6e-172 608.2 712 46.5
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.7e-171 607.1 705 49.1
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 3.2e-170 602.8 671 49.9
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.8e-168 597.0 637 53.1
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 1.6e-166 590.5 723 46.3
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.1e-166 590.1 719 45.8
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 3.7e-166 589.3 738 47.2
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 8.1e-166 588.2 721 45.6
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.1e-165 587.8 738 47.4
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 1.1e-165 587.8 701 45.9
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.4e-165 587.4 733 46.5
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.4e-165 587.4 739 47.6
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 3.1e-165 586.3 718 45.7
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 6.9e-165 585.1 721 46.7
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.2e-164 584.3 720 45.3
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.0e-164 583.6 725 47.6
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 5.8e-164 582.0 726 45.9
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 2.2e-163 580.1 729 45.1
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 3.8e-163 579.3 729 45.8
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 4.9e-163 578.9 718 46.4
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 2.4e-162 576.6 714 46.4
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.6e-161 573.9 623 51.4
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.1e-161 573.5 718 46.0
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 2.1e-161 573.5 633 51.3
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 3.5e-161 572.8 765 43.4
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.0e-160 571.2 735 46.0
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.8e-160 570.5 698 45.8
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 2.3e-160 570.1 621 49.8
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.3e-160 570.1 704 46.0
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 3.0e-160 569.7 718 45.8
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 3.3e-159 566.2 718 45.7
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 6.2e-158 562.0 713 45.3
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.7e-155 553.9 623 50.4
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.4e-154 550.8 691 44.3
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.3e-150 537.7 677 45.5
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 8.2e-150 535.0 600 49.0
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 1.4e-149 534.3 797 43.4
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.1e-146 524.6 674 45.7
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.9e-146 523.9 694 44.2
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 2.7e-145 520.0 624 46.3
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.1e-136 489.2 712 41.9
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 1.1e-135 488.0 765 39.6
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 2.6e-132 476.9 530 51.3
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.3e-128 463.8 633 43.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.6e-119 433.7 471 48.8
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 6.3e-118 429.1 816 34.7
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 7.7e-116 422.2 721 39.0
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 8.8e-112 408.7 764 36.0
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.0e-111 407.5 708 36.4
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.0e-111 407.5 749 36.3
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 3.2e-85 320.5 527 36.4
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 6.0e-84 316.2 505 38.0
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.7e-78 298.1 702 31.6
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.2e-72 276.6 462 35.5
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.1e-64 252.3 435 38.2
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.3e-59 234.6 199 59.8
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.7e-54 218.4 671 26.2
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.6e-44 185.3 222 41.9
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 9.6e-42 176.0 127 67.7
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 6.5e-38 163.3 219 42.9
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 1.2e-36 159.1 112 68.8
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.3e-35 155.6 135 54.1
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 1.9e-34 151.8 98 73.5
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.0e-31 141.7 95 67.4
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 5.9e-31 140.2 304 34.5
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 3.2e-29 134.4 94 66.0
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 2.4e-24 118.2 111 51.4
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 9.1e-24 116.3 149 45.0
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 9.4e-21 106.3 73 68.5
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 1.2e-15 89.4 94 55.3
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 8.0e-12 76.6 246 30.5
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 3.5e-07 61.2 158 31.6
AUR62037546 Chenopodium quinoa HOM05D001439 ORTHO05D007599 3.8e-06 57.8 83 42.2
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 3.8e-06 57.8 147 34.0
vmacro10348 Vaccinium macrocarpon HOM05D001439 ORTHO05D007599 5.0e-06 57.4 122 32.0


User provided reference genes

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