Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 9.3e-167 590.1 295 100.0
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.1e-154 550.1 293 92.8
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 6.3e-147 524.2 295 86.8
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 1.7e-144 516.2 298 87.2
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 3.8e-136 488.4 295 82.7
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.6e-134 481.9 266 87.2
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 2.2e-131 472.6 292 80.5
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 2.4e-130 469.2 293 78.8
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 3.1e-130 468.8 293 78.5
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.2e-129 466.8 296 77.0
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 8.5e-128 460.7 276 79.3
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 1.0e-125 453.8 289 76.5
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 1.0e-125 453.8 289 76.5
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 1.8e-125 453.0 294 78.6
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.8e-125 453.0 276 77.9
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 2.3e-125 452.6 296 74.3
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 4.0e-125 451.8 281 77.6
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.0e-125 451.8 276 77.5
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.0e-124 449.5 255 82.4
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 2.0e-124 449.5 284 74.6
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 2.6e-124 449.1 283 74.6
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 2.6e-124 449.1 281 76.5
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 4.4e-124 448.4 286 75.2
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 5.7e-124 448.0 285 75.1
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 7.5e-124 447.6 272 77.2
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 7.5e-124 447.6 264 79.5
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 7.5e-124 447.6 285 74.7
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 9.8e-124 447.2 286 73.8
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 1.3e-123 446.8 269 77.7
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 2.2e-123 446.0 285 74.7
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 3.7e-123 445.3 284 74.3
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 3.7e-123 445.3 264 78.8
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.8e-123 444.9 276 76.4
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 4.8e-123 444.9 272 76.5
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 8.3e-123 444.1 282 75.5
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.1e-122 443.7 272 76.5
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.1e-122 443.7 276 75.7
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.4e-122 443.4 282 75.2
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 1.4e-122 443.4 272 76.5
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.8e-122 443.0 282 74.8
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.8e-122 443.0 282 75.2
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.8e-122 443.0 254 81.9
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.8e-122 443.0 283 75.6
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 7.0e-122 441.0 271 76.4
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 9.1e-122 440.7 284 74.6
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 1.2e-121 440.3 273 76.6
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.0e-121 439.5 284 74.3
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 2.7e-121 439.1 282 74.5
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.7e-121 439.1 282 75.2
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 2.7e-121 439.1 270 76.3
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 3.5e-121 438.7 285 74.4
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 5.9e-121 438.0 284 72.9
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 5.9e-121 438.0 285 73.0
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.0e-120 437.2 263 77.2
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 1.3e-120 436.8 278 73.7
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.7e-120 436.4 282 73.8
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.7e-120 436.4 270 76.7
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 1.7e-120 436.4 278 73.7
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 1.7e-120 436.4 269 76.2
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 2.3e-120 436.0 288 73.6
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 2.9e-120 435.6 267 76.0
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 5.0e-120 434.9 262 77.1
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 6.6e-120 434.5 277 75.8
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 6.6e-120 434.5 273 75.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 8.6e-120 434.1 306 68.6
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 8.6e-120 434.1 306 68.6
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.1e-119 433.7 278 73.7
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 1.9e-119 433.0 280 75.0
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.9e-119 433.0 278 72.7
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.9e-119 433.0 289 73.7
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 2.5e-119 432.6 282 74.1
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 4.2e-119 431.8 266 75.6
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 5.5e-119 431.4 263 74.1
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 5.5e-119 431.4 282 73.4
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 7.2e-119 431.0 266 75.2
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.6e-118 428.7 285 73.0
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 6.1e-118 427.9 279 72.4
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 6.1e-118 427.9 272 75.0
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.0e-117 427.2 255 77.6
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.0e-117 427.2 281 72.2
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 3.0e-117 425.6 265 74.7
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 3.0e-117 425.6 272 72.4
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 6.8e-117 424.5 263 75.3
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.5e-116 423.3 276 74.3
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 5.7e-116 421.4 251 78.5
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.3e-115 420.2 254 77.2
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.1e-114 417.2 278 71.2
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 7.0e-114 414.5 243 78.2
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 7.0e-114 414.5 243 78.2
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 2.0e-113 412.9 243 78.2
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 5.0e-112 408.3 316 64.2
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.5e-111 406.8 243 75.7
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 3.3e-111 405.6 295 67.5
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.3e-107 393.7 252 71.8
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 7.0e-106 387.9 279 67.0
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 1.6e-102 376.7 219 82.6
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.5e-100 370.2 303 63.0
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 7.5e-100 367.9 269 64.7
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.4e-98 363.6 259 65.3
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 5.6e-95 351.7 261 61.7
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 3.1e-93 345.9 274 60.2
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 6.8e-93 344.7 246 71.1
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.9e-91 339.3 258 67.4
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 8.3e-91 337.8 273 58.6
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 2.3e-88 329.7 199 80.4
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.5e-87 327.0 275 57.8
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 6.2e-86 321.6 192 77.6
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.2e-84 317.4 192 76.0
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 5.8e-84 315.1 192 75.5
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 7.6e-84 314.7 224 67.9
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 7.6e-84 314.7 190 76.8
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 1.2e-81 307.4 263 58.6
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 1.7e-80 303.5 177 79.7
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 2.5e-79 299.7 190 72.1
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 4.7e-78 295.4 187 74.3
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.0e-76 290.0 264 54.9
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 4.9e-75 285.4 243 56.8
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 9.6e-71 271.2 210 65.2
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 8.7e-64 248.1 256 49.6
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 2.6e-60 236.5 142 76.8
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 3.3e-55 219.5 257 49.4
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 1.4e-53 214.2 188 56.4
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 2.5e-39 166.8 130 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.5e-34 150.2 274 35.8
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 9.4e-34 148.3 85 78.8
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 2.3e-24 117.1 315 28.9
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.1e-21 108.2 288 34.4
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 2.0e-20 104.0 65 73.8
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 1.3e-19 101.3 65 67.7
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 4.0e-16 89.7 105 52.4
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 2.8e-14 83.6 72 63.9
MCO15G348 Micromonas commoda HOM05D006171 ORTHO05D268671 2.4e-13 80.5 251 33.9


User provided reference genes

Program Settings