Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 9.2e-42 174.5 222 100.0
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.2e-35 153.3 222 90.5
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 3.2e-34 149.4 156 81.4
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 2.3e-29 133.3 154 89.6
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 8.9e-29 131.3 155 80.6
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 4.9e-27 125.6 156 85.3
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 1.1e-21 107.8 155 79.4
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 3.4e-20 102.8 72 83.3
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 4.4e-20 102.4 153 63.4
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 9.9e-20 101.3 86 73.3
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.7e-19 100.5 154 64.9
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 2.9e-19 99.8 84 69.0
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 8.4e-19 98.2 71 77.5
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 1.1e-18 97.8 156 78.8
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.2e-17 94.4 83 74.7
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 1.6e-17 94.0 68 79.4
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 2.1e-17 93.6 164 72.6
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 4.6e-17 92.4 67 79.1
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 6.0e-17 92.0 69 78.3
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 6.0e-17 92.0 69 78.3
Glyma.04G206600 Glycine max HOM05D003347 ORTHO05D003821 1.3e-16 90.9 156 75.6
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.3e-16 90.9 155 70.3
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 1.7e-16 90.5 70 74.3
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 2.3e-16 90.1 77 66.2
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 3.0e-16 89.7 72 68.1
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 5.1e-16 89.0 163 74.2
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 6.6e-16 88.6 150 79.3
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 6.6e-16 88.6 164 76.2
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 2.5e-15 86.7 69 73.9
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 2.5e-15 86.7 72 72.2
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 3.3e-15 86.3 136 75.7
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 7.3e-15 85.1 63 81.0
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.6e-15 84.7 168 69.0
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.6e-14 84.0 150 74.7
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.1e-14 83.6 150 75.3
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 2.1e-14 83.6 81 59.3
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 1.1e-13 81.3 166 68.7
arahy.Tifrunner.gnm1.ann1.0YHR6E Arachis hypogaea HOM05D003347 ORTHO05D003821 1.4e-13 80.9 169 68.0
arahy.Tifrunner.gnm1.ann1.3X6E38 Arachis hypogaea HOM05D003347 ORTHO05D003821 1.4e-13 80.9 169 68.0
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 1.4e-13 80.9 168 56.5
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.8e-13 80.5 163 71.2
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.0e-13 79.3 70 65.7
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 5.3e-13 79.0 72 65.3
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 5.3e-13 79.0 70 64.3
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 9.0e-13 78.2 73 71.2
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 9.0e-13 78.2 72 66.7
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.2e-12 77.8 163 66.3
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 2.6e-12 76.6 125 70.4
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 2.6e-12 76.6 164 50.0
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 3.4e-12 76.3 70 65.7
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 4.5e-12 75.9 150 63.3
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 4.5e-12 75.9 70 64.3
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 4.5e-12 75.9 70 64.3
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 4.5e-12 75.9 77 72.7
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 4.5e-12 75.9 150 72.7
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 5.8e-12 75.5 83 59.0
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.8e-12 75.5 150 62.0
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 5.8e-12 75.5 58 74.1
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 7.6e-12 75.1 72 62.5
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 9.9e-12 74.7 85 55.3
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 9.9e-12 74.7 125 62.4
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 1.3e-11 74.3 72 56.9
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.7e-11 73.9 68 64.7
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.2e-11 73.6 72 65.3
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 2.9e-11 73.2 160 73.1
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 2.9e-11 73.2 155 54.8
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 3.8e-11 72.8 72 65.3
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 3.8e-11 72.8 72 62.5
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 4.9e-11 72.4 73 63.0
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 4.9e-11 72.4 71 64.8
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 6.4e-11 72.0 68 63.2
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 6.4e-11 72.0 72 63.9
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 8.4e-11 71.6 150 71.3
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.1e-10 71.2 150 66.7
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 1.1e-10 71.2 148 59.5
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 1.1e-10 71.2 72 63.9
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.1e-10 71.2 72 63.9
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.9e-10 70.5 70 60.0
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 2.4e-10 70.1 86 58.1
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 2.4e-10 70.1 146 73.3
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 3.2e-10 69.7 81 50.6
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 3.2e-10 69.7 50 78.0
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 4.2e-10 69.3 86 61.6
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 4.2e-10 69.3 150 69.3
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 5.4e-10 68.9 150 61.3
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 5.4e-10 68.9 128 63.3
Ca_17010_v3 Cicer arietinum L. HOM05D003347 ORTHO05D003821 7.1e-10 68.6 152 61.8
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 7.1e-10 68.6 160 68.8
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 1.2e-09 67.8 162 66.0
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 2.1e-09 67.0 160 70.6
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 2.1e-09 67.0 47 78.7
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.1e-09 67.0 70 60.0
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 2.7e-09 66.6 72 55.6
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 3.5e-09 66.2 124 81.5
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 3.5e-09 66.2 166 57.2
Medtr3g097170 Medicago truncatula HOM05D003347 ORTHO05D003821 6.0e-09 65.5 153 71.9
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 7.9e-09 65.1 71 60.6
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.0e-08 64.7 72 59.7
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.3e-08 64.3 150 67.3
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 1.3e-08 64.3 47 74.5
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 1.8e-08 63.9 150 71.3
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 2.3e-08 63.5 164 66.5
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 2.3e-08 63.5 60 60.0
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 3.0e-08 63.2 45 77.8
CARHR200100 Cardamine hirsuta HOM05D012923 ORTHO05D014747 3.9e-08 62.8 55 65.5
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 6.7e-08 62.0 164 65.2
Mapoly0020s0030 Marchantia polymorpha HOM05D003347 ORTHO05D003821 6.7e-08 62.0 52 65.4
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 6.7e-08 62.0 160 70.0
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 8.7e-08 61.6 81 48.1
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.1e-07 61.2 150 59.3
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.1e-07 61.2 62 58.1
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 1.1e-07 61.2 150 66.7
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 1.5e-07 60.8 46 76.1
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 1.9e-07 60.5 47 72.3
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 1.9e-07 60.5 155 57.4
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.5e-07 60.1 121 56.2
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 2.5e-07 60.1 88 50.0
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 2.5e-07 60.1 45 73.3
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 3.3e-07 59.7 150 68.7
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 3.3e-07 59.7 41 80.5
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 3.3e-07 59.7 124 75.0
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 4.3e-07 59.3 82 48.8
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 7.4e-07 58.5 124 52.4
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 7.4e-07 58.5 153 68.6
Os10g0214400 Oryza sativa ssp. japonica HOM05D003347 ORTHO05D003821 9.6e-07 58.2 55 60.0
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 1.3e-06 57.8 72 51.4
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 2.8e-06 56.6 124 77.4
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 3.6e-06 56.2 160 67.5
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 3.6e-06 56.2 70 50.0
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.6e-06 56.2 164 63.4
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 4.8e-06 55.8 160 67.5
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 4.8e-06 55.8 86 55.8
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 4.8e-06 55.8 150 68.7
DCAR_031791 Daucus carota HOM05D003347 ORTHO05D003821 6.2e-06 55.5 66 56.1
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 6.2e-06 55.5 82 46.3
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 8.1e-06 55.1 46 67.4
SHI11423 Sapria himalayana HOM05D003347 ORTHO05D003821 8.1e-06 55.1 70 51.4
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 8.1e-06 55.1 59 59.3


User provided reference genes

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