Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.6e-38 162.2 77 100.0
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 3.5e-25 117.9 77 71.4
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 3.5e-25 117.9 72 73.6
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 5.1e-24 114.0 76 67.1
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 8.7e-24 113.2 67 77.6
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 7.4e-23 110.2 67 74.6
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 7.4e-23 110.2 77 67.5
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.6e-22 109.0 77 66.2
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 3.7e-22 107.8 73 69.9
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 3.7e-22 107.8 76 65.8
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 4.8e-22 107.5 67 74.6
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 1.1e-21 106.3 75 69.3
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.4e-21 105.1 71 74.6
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.4e-21 105.1 64 71.9
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 2.4e-21 105.1 66 69.7
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 3.1e-21 104.8 78 65.4
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.9e-21 103.6 78 65.4
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.2e-20 102.8 78 65.4
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.6e-20 101.7 78 65.4
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 1.0e-19 99.8 81 63.0
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.9e-19 98.2 77 62.3
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.9e-19 98.2 75 66.7
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 6.5e-19 97.1 77 62.3
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.5e-19 96.7 78 61.5
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 8.5e-19 96.7 78 61.5
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 1.4e-18 95.9 67 68.7
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.4e-18 95.9 69 65.2
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 3.2e-18 94.7 77 62.3
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 3.2e-18 94.7 54 74.1
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 1.2e-17 92.8 77 58.4
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 2.7e-17 91.7 69 59.4
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.6e-17 90.9 79 55.7
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.0e-16 89.7 79 57.0
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.3e-16 88.6 82 57.3
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.9e-16 87.8 83 57.8
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.9e-16 87.8 83 57.8
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.5e-15 85.9 71 57.7
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 7.4e-15 83.6 80 56.2
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 7.4e-15 83.6 74 60.8
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 4.8e-14 80.9 69 60.9
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 4.8e-14 80.9 76 55.3
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.8e-14 80.9 76 55.3
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.8e-14 80.9 76 55.3
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 6.3e-14 80.5 75 56.0
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.1e-13 79.7 76 53.9
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 1.4e-13 79.3 71 52.1
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.4e-13 78.6 77 53.2
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 6.9e-13 77.0 76 56.6
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 9.1e-13 76.6 65 55.4
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 1.2e-12 76.3 76 52.6
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 7.7e-12 73.6 84 51.2
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 7.7e-12 73.6 76 52.6
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 7.7e-12 73.6 66 57.6
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 7.7e-12 73.6 74 50.0
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.7e-11 72.4 81 49.4
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.2e-11 72.0 83 48.2
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 2.9e-11 71.6 48 66.7
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.8e-11 71.2 71 53.5
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 3.8e-11 71.2 64 54.7
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 5.0e-11 70.9 78 51.3
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.0e-11 70.9 73 52.1
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.1e-10 69.7 75 50.7
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.4e-10 69.3 73 50.7
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.4e-10 69.3 74 52.7
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 1.9e-10 68.9 46 67.4
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.9e-10 68.9 61 55.7
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 2.5e-10 68.6 67 53.7
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 3.2e-10 68.2 77 46.8
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 3.2e-10 68.2 70 60.0
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.2e-10 67.8 72 48.6
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 4.2e-10 67.8 63 55.6
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 5.5e-10 67.4 76 44.7
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 5.5e-10 67.4 78 48.7
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 5.5e-10 67.4 76 44.7
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 5.5e-10 67.4 76 44.7
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 5.5e-10 67.4 78 48.7
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.5e-10 67.4 70 54.3
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 7.2e-10 67.0 78 48.7
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 7.2e-10 67.0 78 48.7
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 7.2e-10 67.0 60 51.7
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 9.4e-10 66.6 59 59.3
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 9.4e-10 66.6 79 43.0
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 9.4e-10 66.6 64 54.7
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 1.2e-09 66.2 71 50.7
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-09 65.9 78 47.4
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-09 65.9 78 47.4
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 1.6e-09 65.9 78 47.4
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 2.7e-09 65.1 77 46.8
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-09 65.1 76 43.4
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-09 65.1 77 46.8
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 2.7e-09 65.1 77 46.8
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.7e-09 65.1 76 43.4
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 2.7e-09 65.1 77 46.8
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.7e-09 65.1 77 50.6
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 2.7e-09 65.1 62 51.6
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 3.6e-09 64.7 75 44.0
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 3.6e-09 64.7 78 46.2
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 3.6e-09 64.7 70 54.3
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.6e-09 64.7 71 50.7
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 4.6e-09 64.3 75 48.0
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 4.6e-09 64.3 75 48.0
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 4.6e-09 64.3 70 57.1
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.9e-09 63.5 89 42.7
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.0e-08 63.2 60 53.3
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 1.0e-08 63.2 75 46.7
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 1.0e-08 63.2 75 46.7
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 1.4e-08 62.8 65 55.4
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.8e-08 62.4 77 45.5
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 5.1e-08 60.8 73 49.3
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 6.7e-08 60.5 65 55.4
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 6.7e-08 60.5 67 56.7
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 6.7e-08 60.5 70 47.1
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 1.1e-07 59.7 75 49.3
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.5e-07 59.3 39 59.0
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 1.5e-07 59.3 61 54.1
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 2.0e-07 58.9 82 42.7
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 2.0e-07 58.9 69 47.8
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.6e-07 58.5 93 36.6
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.6e-07 58.5 93 35.5
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 2.6e-07 58.5 90 41.1
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 2.6e-07 58.5 78 46.2
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 2.6e-07 58.5 78 46.2
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 2.6e-07 58.5 78 46.2
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 7.4e-07 57.0 90 42.2
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 7.4e-07 57.0 61 52.5
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 9.7e-07 56.6 73 41.1
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 1.3e-06 56.2 79 43.0
SGA_v2.0_scaffold137G35143 Striga asiatica HOM05D004540 ORTHO05D004852 1.3e-06 56.2 68 47.1
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.7e-06 55.8 89 36.0
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-06 55.8 89 36.0
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 2.8e-06 55.1 77 42.9


User provided reference genes

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