Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 1.3e-100 369.8 197 100.0
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 6.4e-87 324.3 197 84.8
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 4.1e-86 321.6 198 84.8
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 2.7e-85 318.9 198 80.8
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 3.5e-85 318.5 199 85.4
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 1.3e-84 316.6 198 84.8
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 3.0e-84 315.5 197 86.3
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 3.0e-84 315.5 199 82.4
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 3.9e-84 315.1 197 84.3
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 3.9e-84 315.1 203 84.7
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 1.5e-83 313.2 199 81.4
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 2.5e-83 312.4 200 78.0
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 5.6e-83 311.2 201 84.1
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 2.8e-82 308.9 200 77.5
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.8e-82 308.9 200 77.5
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 3.6e-82 308.5 201 80.1
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 3.6e-82 308.5 200 77.5
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 4.7e-82 308.1 201 82.1
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 4.7e-82 308.1 200 77.5
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.4e-81 306.6 200 76.5
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.4e-81 306.6 200 77.0
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 3.1e-81 305.4 199 80.4
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 6.8e-81 304.3 198 75.8
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 2.6e-80 302.4 199 78.4
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.6e-80 302.4 199 77.9
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.6e-80 302.4 199 77.9
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 4.4e-80 301.6 199 82.4
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 5.8e-80 301.2 199 81.4
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 7.5e-80 300.8 203 80.3
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 9.9e-80 300.4 199 79.4
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 2.2e-79 299.3 199 77.4
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 2.9e-79 298.9 203 76.8
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 6.4e-79 297.7 197 78.2
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 6.4e-79 297.7 202 76.7
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 8.3e-79 297.4 198 77.3
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 8.3e-79 297.4 202 75.2
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 1.9e-78 296.2 199 77.4
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 1.9e-78 296.2 201 79.6
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 4.1e-78 295.0 199 76.9
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 7.1e-78 294.3 202 74.3
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 9.2e-78 293.9 197 76.6
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 9.2e-78 293.9 197 76.6
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 9.2e-78 293.9 197 76.6
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 2.1e-77 292.7 202 73.8
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 1.3e-76 290.0 206 75.7
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 1.7e-76 289.7 203 74.4
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 2.3e-76 289.3 176 80.1
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 2.3e-76 289.3 198 75.3
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 3.0e-76 288.9 198 73.2
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 1.5e-75 286.6 198 72.7
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 1.9e-75 286.2 177 83.6
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 1.9e-75 286.2 176 81.2
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.1e-74 282.7 197 74.6
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 2.1e-74 282.7 197 74.1
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 2.1e-74 282.7 197 74.1
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 2.8e-74 282.3 176 79.5
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 3.6e-74 282.0 200 74.0
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 4.7e-74 281.6 190 77.4
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 4.7e-74 281.6 178 80.9
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 8.1e-74 280.8 176 80.1
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 1.8e-73 279.6 177 80.2
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 3.1e-73 278.9 181 77.9
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 3.1e-73 278.9 197 70.1
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 6.8e-73 277.7 168 81.0
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 8.9e-73 277.3 177 79.7
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 4.9e-71 271.6 197 70.6
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 8.4e-71 270.8 183 74.9
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.9e-70 269.6 178 75.3
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 4.2e-70 268.5 199 73.4
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 7.1e-70 267.7 200 72.0
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 3.5e-69 265.4 211 69.7
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 3.0e-68 262.3 208 68.8
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 3.0e-68 262.3 208 68.8
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 3.0e-68 262.3 208 68.8
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 3.0e-68 262.3 208 68.8
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 3.0e-68 262.3 214 67.3
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 5.1e-68 261.5 206 68.9
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 5.1e-68 261.5 199 72.9
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 8.7e-68 260.8 174 74.7
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 1.1e-67 260.4 211 68.2
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 1.9e-67 259.6 204 68.1
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 3.3e-67 258.8 213 67.6
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 3.3e-67 258.8 213 67.6
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 3.3e-67 258.8 207 68.1
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 5.6e-67 258.1 216 66.2
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 7.3e-67 257.7 213 66.7
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 1.3e-66 256.9 180 71.1
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.3e-66 256.9 202 69.8
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 1.3e-66 256.9 195 69.7
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 3.6e-66 255.4 177 70.6
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 5.3e-65 251.5 186 68.3
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 5.3e-65 251.5 186 68.3
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 9.3e-62 240.7 213 64.3
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 1.2e-61 240.4 154 78.6
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.3e-60 236.9 176 68.8
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 1.6e-58 229.9 150 76.0
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 4.0e-57 225.3 152 74.3
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 2.7e-53 212.6 145 73.1
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 1.9e-51 206.5 202 60.4
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 4.0e-49 198.7 176 56.2
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 3.4e-48 195.7 143 70.6
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 6.0e-45 184.9 176 52.8
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 1.4e-41 173.7 174 51.7
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 3.1e-41 172.6 107 78.5
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 1.5e-40 170.2 175 49.7
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 2.6e-40 169.5 107 76.6
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.0e-39 165.2 176 53.4
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 1.0e-36 157.5 100 77.0
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.8e-31 139.0 174 47.7
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 2.1e-29 133.3 116 56.9
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 7.7e-24 114.8 131 49.6
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 2.0e-19 100.1 63 79.4
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 9.4e-14 81.3 67 64.2
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 1.1e-11 74.3 48 72.9
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 2.4e-09 66.6 64 64.1
Lj2g0024286 Lotus japonicus HOM05D006880 ORTHO05D236304 2.9e-07 59.7 65 53.8


User provided reference genes

Program Settings