Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 4.0e-97 358.2 200 100.0
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 1.2e-80 303.5 200 83.5
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 6.3e-74 281.2 183 88.5
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 1.0e-71 273.9 203 66.0
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 3.8e-71 271.9 204 65.2
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 3.8e-71 271.9 196 64.8
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 6.5e-71 271.2 199 65.3
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 1.1e-70 270.4 202 65.3
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 4.2e-70 268.5 200 63.0
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 9.4e-70 267.3 204 64.2
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 9.4e-70 267.3 201 65.2
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.6e-69 266.5 204 63.2
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 1.6e-69 266.5 200 65.0
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 3.6e-69 265.4 200 63.5
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.6e-69 265.4 198 63.6
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 4.7e-69 265.0 198 63.1
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 1.4e-68 263.5 200 62.5
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.8e-68 263.1 200 62.5
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 1.8e-68 263.1 202 62.4
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 2.3e-68 262.7 201 62.7
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 3.0e-68 262.3 196 64.3
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.0e-68 262.3 200 62.0
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 3.0e-68 262.3 200 63.5
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 3.0e-68 262.3 202 62.9
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 3.9e-68 261.9 194 64.4
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 5.2e-68 261.5 200 62.5
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 6.7e-68 261.2 200 63.5
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 1.1e-67 260.4 200 63.0
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 2.0e-67 259.6 193 62.7
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 2.6e-67 259.2 198 62.1
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.6e-67 259.2 194 62.9
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 2.6e-67 259.2 206 61.2
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 3.3e-67 258.8 200 61.0
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 5.7e-67 258.1 200 60.5
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 5.7e-67 258.1 201 62.7
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 7.4e-67 257.7 201 62.7
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 9.7e-67 257.3 192 63.0
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 9.7e-67 257.3 192 63.0
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.7e-66 255.4 194 61.3
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 4.8e-66 255.0 201 60.7
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 6.3e-66 254.6 220 58.2
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 8.2e-66 254.2 190 64.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 8.2e-66 254.2 192 62.0
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.1e-65 253.8 196 62.2
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.1e-65 253.8 200 61.0
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 1.8e-65 253.1 202 61.9
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 1.8e-65 253.1 200 62.0
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 1.8e-65 253.1 202 61.4
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 2.4e-65 252.7 190 63.2
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 2.4e-65 252.7 201 60.2
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 2.4e-65 252.7 202 58.9
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 4.1e-65 251.9 198 62.1
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 9.1e-65 250.8 201 60.2
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.6e-64 250.0 203 60.6
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 1.6e-64 250.0 203 60.6
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 2.0e-64 249.6 201 58.2
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 4.5e-64 248.4 202 59.9
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 5.9e-64 248.1 200 59.5
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 5.9e-64 248.1 192 59.9
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.7e-63 246.5 201 60.2
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 2.2e-63 246.1 206 60.2
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 5.0e-63 245.0 208 59.6
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.1e-62 243.8 200 58.5
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 1.5e-62 243.4 201 58.7
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.5e-62 242.7 200 58.5
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 7.2e-62 241.1 191 60.2
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.1e-61 239.6 200 58.0
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 2.1e-61 239.6 199 60.3
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 2.7e-61 239.2 204 57.8
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 2.7e-61 239.2 204 57.8
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 8.0e-61 237.7 201 58.7
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 2.3e-60 236.1 206 58.7
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 6.7e-60 234.6 200 56.5
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 6.7e-60 234.6 203 57.1
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 8.8e-60 234.2 201 55.7
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 2.0e-59 233.0 204 56.9
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 2.0e-59 233.0 197 58.9
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 7.5e-59 231.1 188 58.5
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 1.3e-58 230.3 196 57.7
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.7e-58 229.9 200 55.0
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 2.2e-58 229.6 196 57.1
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 3.7e-58 228.8 179 59.8
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 4.8e-58 228.4 195 57.9
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 4.8e-58 228.4 196 54.6
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 4.8e-58 228.4 201 54.2
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 8.2e-58 227.6 190 55.8
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 8.2e-58 227.6 200 55.0
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 1.1e-57 227.3 195 55.4
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 1.4e-57 226.9 191 57.6
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 1.8e-57 226.5 214 54.2
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 2.4e-57 226.1 193 58.0
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 7.0e-57 224.6 187 57.8
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 1.2e-56 223.8 196 55.1
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 1.2e-56 223.8 200 54.5
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 1.2e-56 223.8 201 55.7
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 2.0e-56 223.0 201 54.7
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 2.7e-56 222.6 190 57.4
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 3.5e-56 222.2 195 54.9
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 1.7e-55 219.9 196 55.1
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 1.7e-55 219.9 196 55.1
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 1.7e-55 219.9 202 66.8
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 3.8e-55 218.8 196 54.6
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 3.8e-55 218.8 196 55.1
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 1.9e-54 216.5 274 44.2
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 5.5e-54 214.9 192 55.2
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.2e-53 213.8 184 70.1
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 2.7e-53 212.6 180 56.7
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 4.7e-53 211.8 192 53.1
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 3.0e-52 209.1 210 53.3
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 5.2e-52 208.4 180 56.1
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 5.2e-52 208.4 180 56.1
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 1.2e-51 207.2 181 56.9
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 1.2e-51 207.2 194 51.0
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 4.4e-51 205.3 113 77.9
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 4.4e-51 205.3 273 41.8
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 1.3e-50 203.8 169 70.4
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 1.7e-50 203.4 177 54.8
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 7.0e-49 198.0 158 63.3
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 9.1e-49 197.6 173 60.7
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 1.5e-46 190.3 114 72.8
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 9.5e-46 187.6 113 69.0
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 1.6e-45 186.8 201 47.3
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 2.8e-45 186.0 195 47.7
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 8.0e-45 184.5 108 71.3
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 4.0e-44 182.2 191 46.1
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 1.5e-43 180.3 211 46.9
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 1.3e-42 177.2 195 46.7
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 1.3e-42 177.2 162 58.6
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.8e-41 173.3 190 46.8
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 4.1e-41 172.2 194 42.3
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 3.5e-40 169.1 196 44.4
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 6.6e-39 164.9 194 42.8
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 2.5e-38 162.9 151 51.7
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 1.2e-37 160.6 187 40.1
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 2.3e-36 156.4 198 43.4
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 5.2e-36 155.2 189 47.6
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 8.9e-36 154.5 134 53.7
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 3.4e-35 152.5 192 43.8
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 3.4e-35 152.5 192 43.8
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 5.8e-35 151.8 191 40.3
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 7.5e-35 151.4 141 53.9
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 9.8e-35 151.0 192 42.7
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 9.8e-35 151.0 135 60.7
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 3.2e-33 146.0 182 39.0
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 9.2e-33 144.4 189 44.4
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 2.7e-32 142.9 154 47.4
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 3.5e-32 142.5 160 45.6
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.9e-30 136.7 199 41.2
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 5.6e-30 135.2 199 41.2
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 9.5e-30 134.4 132 51.5
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 3.1e-28 129.4 186 39.8
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 9.8e-27 124.4 114 55.3
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 9.9e-19 97.8 56 87.5
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 9.2e-17 91.3 53 69.8
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 7.8e-16 88.2 68 58.8
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.0e-15 87.8 53 66.0
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 2.8e-13 79.7 152 33.6
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 2.2e-10 70.1 143 30.8
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 1.1e-09 67.8 143 29.4
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 1.1e-09 67.8 39 74.4
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.4e-09 67.4 49 55.1
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 2.4e-09 66.6 143 30.1
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 3.2e-09 66.2 133 30.1
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 4.1e-09 65.9 133 30.1
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 3.5e-08 62.8 133 30.1
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 2.3e-07 60.1 140 27.9
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 1.5e-06 57.4 92 32.6
Pp3c3_2100 Physcomitrium patens HOM05D006348 ORTHO05D008261 4.3e-06 55.8 142 26.1
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 4.3e-06 55.8 140 28.6
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 7.3e-06 55.1 133 25.6


User provided reference genes

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