Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G143600 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 2.8e-84 315.5 189 100.0
VMungo1309G1362 Vigna mungo HOM05D004160 ORTHO05D004757 2.1e-58 229.6 170 73.5
Glyma.04G092300 Glycine max HOM05D004160 ORTHO05D004757 6.2e-55 218.0 170 67.6
Glyma.06G094100 Glycine max HOM05D004160 ORTHO05D004757 7.1e-51 204.5 170 76.5
TPR.G16029 Trifolium pratense HOM05D004160 ORTHO05D004757 4.4e-45 185.3 155 65.8
Medtr5g065930 Medicago truncatula HOM05D004160 ORTHO05D004757 1.7e-44 183.3 155 69.0
Potri.005G157500 Populus trichocarpa HOM05D004160 ORTHO05D004757 2.2e-44 183.0 157 59.9
CSS0034828 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 6.4e-44 181.4 163 60.7
Phvul.008G180400 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 6.4e-44 181.4 161 66.5
Cfa013695 Carpinus fangiana HOM05D004160 ORTHO05D004757 8.4e-44 181.0 159 67.3
LjContig00408g0003189 Lotus japonicus HOM05D004160 ORTHO05D004757 8.4e-44 181.0 166 61.4
Lalb_Chr04g0252941 Lupinus albus HOM05D004160 ORTHO05D004757 1.4e-43 180.3 155 61.9
Psat2g066520 Pisum sativum HOM05D004160 ORTHO05D004757 1.4e-43 180.3 155 61.9
CiPaw.07G167300 Carya illinoinensis HOM05D004160 ORTHO05D004757 3.2e-43 179.1 162 62.3
CiPaw.08G054600 Carya illinoinensis HOM05D004160 ORTHO05D004757 4.2e-43 178.7 155 59.4
arahy.Tifrunner.gnm1.ann1.RJ93MJ Arachis hypogaea HOM05D004160 ORTHO05D004757 7.1e-43 177.9 170 55.9
Sabra05G0120500 Salix brachista HOM05D004160 ORTHO05D004757 1.2e-42 177.2 157 58.6
arahy.Tifrunner.gnm1.ann1.GVS2KG Arachis hypogaea HOM05D004160 ORTHO05D004757 1.6e-42 176.8 170 55.3
Hma1.2p1_0125F.1_g059040 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 1.6e-42 176.8 159 63.5
TWI36G0608 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 1.6e-42 176.8 155 58.7
Potri.002G104200 Populus trichocarpa HOM05D004160 ORTHO05D004757 4.6e-42 175.3 161 58.4
VMungo0647G1165 Vigna mungo HOM05D004160 ORTHO05D004757 5.1e-41 171.8 170 68.8
Cpa.g.sc309.1 Carica papaya HOM05D004160 ORTHO05D004757 8.7e-41 171.0 173 54.3
RcHm_v2.0_Chr7g0237181 Rosa chinensis HOM05D004160 ORTHO05D004757 8.7e-41 171.0 172 61.0
TWI56G0453 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 8.7e-41 171.0 155 57.4
Ca_05405_v3 Cicer arietinum L. HOM05D004160 ORTHO05D004757 1.1e-40 170.6 155 58.1
Lalb_Chr10g0102681 Lupinus albus HOM05D004160 ORTHO05D004757 1.1e-40 170.6 155 60.6
vmacro21323 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 1.1e-40 170.6 156 59.6
arahy.Tifrunner.gnm1.ann1.BVU39Z Arachis hypogaea HOM05D004160 ORTHO05D004757 3.3e-40 169.1 156 59.6
arahy.Tifrunner.gnm1.ann1.IX6BVV Arachis hypogaea HOM05D004160 ORTHO05D004757 3.3e-40 169.1 156 59.6
CSS0048585 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 4.3e-40 168.7 155 58.1
CSS0013226 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 7.3e-40 167.9 155 58.1
Gorai.009G279500 Gossypium raimondii HOM05D004160 ORTHO05D004757 7.3e-40 167.9 156 56.4
Peaxi162Scf00281g00317 Petunia axillaris HOM05D004160 ORTHO05D004757 7.3e-40 167.9 155 61.9
Actinidia10375 Actinidia chinensis HOM05D004160 ORTHO05D004757 9.6e-40 167.5 156 58.3
Gohir.D05G267400 Gossypium hirsutum HOM05D004160 ORTHO05D004757 9.6e-40 167.5 156 56.4
Sopen04g030060 Solanum pennellii HOM05D004160 ORTHO05D004757 1.2e-39 167.2 159 57.2
Rhsim06G0073400 Rhododendron simsii HOM05D004160 ORTHO05D004757 1.6e-39 166.8 156 59.0
Dinv42627 Davidia involucrata HOM05D004160 ORTHO05D004757 2.1e-39 166.4 154 66.2
MD15G1382900 Malus domestica HOM05D004160 ORTHO05D004757 2.1e-39 166.4 173 61.8
FAN04G0528 Fragaria x ananassa HOM05D004160 ORTHO05D004757 2.8e-39 166.0 164 67.7
QL09p017310 Quercus lobata HOM05D004160 ORTHO05D004757 2.8e-39 166.0 160 68.1
PGSC0003DMG401012897 Solanum tuberosum HOM05D004160 ORTHO05D004757 2.8e-39 166.0 159 56.6
GSVIVG01009149001 Vitis vinifera HOM05D004160 ORTHO05D004757 2.8e-39 166.0 171 55.6
Solyc04g076110.4 Solanum lycopersicum HOM05D004160 ORTHO05D004757 3.6e-39 165.6 159 56.6
Gohir.A05G220700 Gossypium hirsutum HOM05D004160 ORTHO05D004757 4.7e-39 165.2 155 61.9
HanXRQChr02g0047531 Helianthus annuus HOM05D004160 ORTHO05D004757 4.7e-39 165.2 156 57.7
Atru.chr13.1038 Acer truncatum HOM05D004160 ORTHO05D004757 6.2e-39 164.9 155 56.1
Gohir.D05G223500 Gossypium hirsutum HOM05D004160 ORTHO05D004757 8.1e-39 164.5 155 60.0
MD08G1195200 Malus domestica HOM05D004160 ORTHO05D004757 8.1e-39 164.5 166 63.9
FAN18G3264 Fragaria x ananassa HOM05D004160 ORTHO05D004757 1.1e-38 164.1 169 65.7
Lsat_1_v5_gn_1_1800 Lactuca sativa HOM05D004160 ORTHO05D004757 1.1e-38 164.1 160 58.8
Thecc.08G068800 Theobroma cacao HOM05D004160 ORTHO05D004757 1.1e-38 164.1 158 62.7
Duzib041G0282 Durio zibethinus HOM05D004160 ORTHO05D004757 1.4e-38 163.7 159 60.4
Manes.02G146200 Manihot esculenta HOM05D004160 ORTHO05D004757 1.4e-38 163.7 165 56.4
Gohir.A05G265100 Gossypium hirsutum HOM05D004160 ORTHO05D004757 1.8e-38 163.3 156 56.4
COL.COLO4_35202 Corchorus olitorius HOM05D004160 ORTHO05D004757 2.4e-38 162.9 160 63.1
FAN13G3204 Fragaria x ananassa HOM05D004160 ORTHO05D004757 2.4e-38 162.9 166 66.3
Nitab4.5_0003300g0030 Nicotiana tabacum HOM05D004160 ORTHO05D004757 3.1e-38 162.5 161 68.9
ECA247G3853 Erigeron canadensis HOM05D004160 ORTHO05D004757 4.0e-38 162.2 155 56.8
FAN08G0272 Fragaria x ananassa HOM05D004160 ORTHO05D004757 4.0e-38 162.2 169 65.1
Cc10_g15690 Coffea canephora HOM05D004160 ORTHO05D004757 5.3e-38 161.8 165 65.5
Rhsim07G0210500 Rhododendron simsii HOM05D004160 ORTHO05D004757 1.5e-37 160.2 186 48.4
PGR042G0674 Punica granatum HOM05D004160 ORTHO05D004757 3.4e-37 159.1 160 59.4
CANSAT25G1973 Cannabis sativa HOM05D004160 ORTHO05D004757 4.4e-37 158.7 155 61.9
DCAR_019307 Daucus carota HOM05D004160 ORTHO05D004757 5.8e-37 158.3 159 55.3
Lj4C734G12 Lonicera japonica HOM05D004160 ORTHO05D004757 7.6e-37 157.9 155 57.4
Haze_22335 Corylus avellana HOM05D004160 ORTHO05D004757 1.3e-36 157.1 96 79.2
Sc01g0001090 Simmondsia chinensis HOM05D004160 ORTHO05D004757 3.8e-36 155.6 156 66.7
CAN.G1375.7 Capsicum annuum HOM05D004160 ORTHO05D004757 4.9e-36 155.2 167 53.3
Eucgr.F02134 Eucalyptus grandis HOM05D004160 ORTHO05D004757 4.9e-36 155.2 160 50.6
Prupe.1G528700 Prunus persica HOM05D004160 ORTHO05D004757 6.4e-36 154.8 172 55.2
TAR381G1705 Trochodendron aralioides HOM05D004160 ORTHO05D004757 8.4e-36 154.5 159 66.0
Dinv44844 Davidia involucrata HOM05D004160 ORTHO05D004757 1.1e-35 154.1 144 56.2
AUR62027862 Chenopodium quinoa HOM05D004160 ORTHO05D004757 1.9e-35 153.3 156 51.9
AUR62019025 Chenopodium quinoa HOM05D004160 ORTHO05D004757 2.4e-35 152.9 156 51.9
FvH4_5g35650 Fragaria vesca HOM05D004160 ORTHO05D004757 4.2e-35 152.1 158 67.1
Gorai.009G230600 Gossypium raimondii HOM05D004160 ORTHO05D004757 7.1e-35 151.4 146 59.6
Hma1.2p1_0010F.1_g006920 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 2.1e-34 149.8 171 50.9
TAR381G1580 Trochodendron aralioides HOM05D004160 ORTHO05D004757 2.1e-34 149.8 160 65.6
Eucgr.F00408 Eucalyptus grandis HOM05D004160 ORTHO05D004757 2.7e-34 149.4 161 59.0
Hund27011 Selenicereus undatus HOM05D004160 ORTHO05D004757 3.5e-34 149.1 165 58.8
Ciclev10002321m.g Citrus clementina HOM05D004160 ORTHO05D004757 6.0e-34 148.3 152 53.3
THA.LOC104799806 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 6.0e-34 148.3 170 48.2
TAR625G1241 Trochodendron aralioides HOM05D004160 ORTHO05D004757 6.0e-34 148.3 156 60.9
vmacro04668 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 6.0e-34 148.3 163 51.5
Ah.05g170710 Amaranthus hybridus HOM05D004160 ORTHO05D004757 1.0e-33 147.5 159 49.1
AT5G49710 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 1.0e-33 147.5 155 49.7
Sabra02G0081700 Salix brachista HOM05D004160 ORTHO05D004757 1.7e-33 146.7 159 55.3
Actinidia29615 Actinidia chinensis HOM05D004160 ORTHO05D004757 3.9e-33 145.6 154 50.6
Aqoxy5G01323 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 3.9e-33 145.6 168 51.2
MELO3C011103.2 Cucumis melo HOM05D004160 ORTHO05D004757 3.9e-33 145.6 155 55.5
Duzib093G1656 Durio zibethinus HOM05D004160 ORTHO05D004757 5.1e-33 145.2 156 53.2
EL10Ac1g01077 Beta vulgaris HOM05D004160 ORTHO05D004757 6.6e-33 144.8 156 58.3
Nitab4.5_0000131g0400 Nicotiana tabacum HOM05D004160 ORTHO05D004757 6.6e-33 144.8 97 73.2
Sed0023007 Sechium edule HOM05D004160 ORTHO05D004757 8.7e-33 144.4 170 49.4
Aqoxy6G01454 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 1.5e-32 143.7 162 61.7
AL8G23640 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 1.9e-32 143.3 152 49.3
Migut.K00588 Erythranthe guttata HOM05D004160 ORTHO05D004757 1.9e-32 143.3 155 54.8
THA.LOC104800042 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 4.3e-32 142.1 167 50.9
SGA_v2.0_scaffold107G30821 Striga asiatica HOM05D004160 ORTHO05D004757 1.6e-31 140.2 154 51.9
Aa31sc399G20 Aethionema arabicum HOM05D004160 ORTHO05D004757 8.1e-31 137.9 166 46.4
Thhalv10026080m.g Eutrema salsugineum HOM05D004160 ORTHO05D004757 8.1e-31 137.9 161 47.2
AT4G24590 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 1.4e-30 137.1 154 51.9
CsaV3_2G030410 Cucumis sativus L. HOM05D004160 ORTHO05D004757 1.4e-30 137.1 156 59.0
MBI06_g36045_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 1.4e-30 137.1 157 49.7
DCAR_012861 Daucus carota HOM05D004160 ORTHO05D004757 2.4e-30 136.3 180 46.1
Manes.18G060500 Manihot esculenta HOM05D004160 ORTHO05D004757 2.4e-30 136.3 158 49.4
Carub.0007s1648 Capsella rubella HOM05D004160 ORTHO05D004757 6.9e-30 134.8 155 53.5
SEGI_35412 Sequoiadendron giganteum HOM05D004160 ORTHO05D004757 6.9e-30 134.8 162 51.2
Nn5g29924 Nelumbo nucifera HOM05D004160 ORTHO05D004757 1.2e-29 134.0 158 50.0
CARHR231990 Cardamine hirsuta HOM05D004160 ORTHO05D004757 1.5e-29 133.7 152 57.2
PSO017G5904 Papaver somniferum HOM05D004160 ORTHO05D004757 2.6e-29 132.9 156 50.0
Sed0000869 Sechium edule HOM05D004160 ORTHO05D004757 3.4e-29 132.5 155 50.3
Sp7g22590 Schrenkiella parvula HOM05D004160 ORTHO05D004757 4.5e-29 132.1 163 44.2
CDE08G0105 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 5.8e-29 131.7 153 47.1
Migut.H00368 Erythranthe guttata HOM05D004160 ORTHO05D004757 5.8e-29 131.7 156 45.5
AL7G28600 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 9.9e-29 131.0 154 54.5
BcaC06g32873 Brassica carinata HOM05D004160 ORTHO05D004757 1.3e-28 130.6 157 48.4
CDE06G1108 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.7e-28 130.2 153 47.1
Carub.0008s0959 Capsella rubella HOM05D004160 ORTHO05D004757 4.9e-28 128.6 161 45.3
C07p53710 Brassica napus HOM05D004160 ORTHO05D004757 6.4e-28 128.3 160 46.2
HPP92_002309 Vanilla planifolia HOM05D004160 ORTHO05D004757 2.4e-27 126.3 156 44.9
ATR0022G063 Amborella trichopoda HOM05D004160 ORTHO05D004757 4.2e-27 125.6 151 48.3
unitig_85.g27260 Utricularia gibba HOM05D004160 ORTHO05D004757 4.2e-27 125.6 154 45.5
Zm00001eb257060 Zea mays HOM05D004160 ORTHO05D004757 1.2e-26 124.0 172 55.2
BraA03t14616Z Brassica rapa HOM05D004160 ORTHO05D004757 1.6e-26 123.6 162 46.9
A03p55420 Brassica napus HOM05D004160 ORTHO05D004757 2.7e-26 122.9 163 56.4
Hund16867 Selenicereus undatus HOM05D004160 ORTHO05D004757 2.7e-26 122.9 101 56.4
A01p15950 Brassica napus HOM05D004160 ORTHO05D004757 4.6e-26 122.1 157 45.9
C01p19930 Brassica napus HOM05D004160 ORTHO05D004757 4.6e-26 122.1 162 45.1
Oeu011647.1 Olea europaea HOM05D004160 ORTHO05D004757 6.0e-26 121.7 166 43.4
BcaNung04961 Brassica carinata HOM05D004160 ORTHO05D004757 7.9e-26 121.3 167 43.7
BolC1t01921H Brassica oleracea HOM05D004160 ORTHO05D004757 1.0e-25 120.9 165 44.8
BraA01t01529Z Brassica rapa HOM05D004160 ORTHO05D004757 2.3e-25 119.8 167 43.1
BolC7t45862H Brassica oleracea HOM05D004160 ORTHO05D004757 5.1e-25 118.6 173 46.2
BraA08t34092Z Brassica rapa HOM05D004160 ORTHO05D004757 5.1e-25 118.6 152 44.1
ClCG08G011790 Citrullus lanatus HOM05D004160 ORTHO05D004757 6.7e-25 118.2 185 48.6
MSTRG.23691 Avicennia marina HOM05D004160 ORTHO05D004757 1.9e-24 116.7 153 41.8
Aa31LG4G9680 Aethionema arabicum HOM05D004160 ORTHO05D004757 4.3e-24 115.5 166 41.0
BcaB03g12437 Brassica carinata HOM05D004160 ORTHO05D004757 1.3e-23 114.0 162 42.6
Os02g0781700 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 1.3e-23 114.0 177 41.2
PSO541G4918 Papaver somniferum HOM05D004160 ORTHO05D004757 1.3e-23 114.0 157 42.7
SalBow1G6265 Salvia bowleyana HOM05D004160 ORTHO05D004757 1.6e-23 113.6 145 45.5
BcaC09g50849 Brassica carinata HOM05D004160 ORTHO05D004757 2.8e-23 112.8 147 45.6
PSO675G9245 Papaver somniferum HOM05D004160 ORTHO05D004757 3.1e-22 109.4 157 47.1
SGA_v2.0_scaffold15G07419 Striga asiatica HOM05D004160 ORTHO05D004757 2.0e-21 106.7 158 48.7
A08p21430 Brassica napus HOM05D004160 ORTHO05D004757 2.6e-21 106.3 156 39.1
BolC8t48579H Brassica oleracea HOM05D004160 ORTHO05D004757 1.9e-19 100.1 152 40.8
MBI02_g09036_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 1.2e-18 97.4 223 34.1
CARHR259070 Cardamine hirsuta HOM05D004160 ORTHO05D004757 7.9e-18 94.7 93 52.7
BcaC07g38165 Brassica carinata HOM05D004160 ORTHO05D004757 3.9e-17 92.4 159 40.3
Zm00001eb101080 Zea mays HOM05D004160 ORTHO05D004757 5.1e-17 92.0 165 37.6
Zm00001eb315410 Zea mays HOM05D004160 ORTHO05D004757 6.7e-17 91.7 103 54.4
Oeu012754.1 Olea europaea HOM05D004160 ORTHO05D004757 1.5e-16 90.5 155 37.4
SHI28776 Sapria himalayana HOM05D004160 ORTHO05D004757 1.0e-12 77.8 53 67.9
Os09g0465500 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 1.3e-12 77.4 100 43.0
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 1.6e-10 70.5 106 40.6
AagrBONN_evm.TU.Sc2ySwM_344.3696 Anthoceros agrestis HOM05D004160 ORTHO05D004757 5.1e-09 65.5 110 36.4
Mapoly0023s0095 Marchantia polymorpha HOM05D004967 ORTHO05D004757 8.7e-09 64.7 113 37.2
SMO235G0072 Selaginella moellendorffii HOM05D004967 ORTHO05D006146 1.1e-06 57.8 62 43.5


User provided reference genes

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