Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 1.5e-95 352.8 182 100.0
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 4.1e-88 328.2 182 94.0
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 1.1e-77 293.5 182 85.2
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 1.3e-73 280.0 181 84.5
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 4.5e-71 271.6 173 83.8
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 4.5e-71 271.6 183 80.9
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 1.0e-70 270.4 181 81.2
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 1.0e-70 270.4 187 79.7
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 6.3e-65 251.1 152 87.5
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 1.4e-64 250.0 170 79.4
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 2.4e-64 249.2 198 69.7
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 9.2e-64 247.3 191 72.8
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 1.2e-63 246.9 196 70.9
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 4.5e-63 245.0 191 72.3
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 4.5e-63 245.0 194 70.1
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 7.7e-63 244.2 182 73.1
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 2.9e-62 242.3 180 72.2
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 8.6e-62 240.7 199 70.9
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 2.1e-60 236.1 198 67.2
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 4.7e-60 235.0 183 72.1
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 2.3e-59 232.6 176 69.3
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 3.0e-59 232.3 172 75.6
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 6.8e-59 231.1 190 66.3
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 6.8e-59 231.1 168 73.8
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 6.8e-59 231.1 184 67.4
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 8.9e-59 230.7 185 67.0
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 8.9e-59 230.7 184 67.4
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 8.9e-59 230.7 183 69.4
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 1.2e-58 230.3 188 66.5
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 1.5e-58 229.9 179 67.6
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 2.6e-58 229.2 185 65.4
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 5.7e-58 228.0 199 65.8
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 9.8e-58 227.3 195 65.1
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 1.3e-57 226.9 182 65.9
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 1.3e-57 226.9 170 73.5
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 1.7e-57 226.5 178 71.3
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 2.9e-57 225.7 186 66.7
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 3.7e-57 225.3 179 66.5
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 3.7e-57 225.3 192 66.1
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 1.1e-56 223.8 180 65.6
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 1.4e-56 223.4 178 66.9
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 1.4e-56 223.4 162 75.3
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 1.8e-56 223.0 192 64.1
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 2.4e-56 222.6 180 65.6
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 2.4e-56 222.6 193 64.2
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 3.2e-56 222.2 179 67.6
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 7.0e-56 221.1 187 65.8
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 7.0e-56 221.1 180 64.4
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 7.0e-56 221.1 192 65.1
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 9.2e-56 220.7 179 65.4
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 9.2e-56 220.7 177 68.9
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 1.2e-55 220.3 191 67.5
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 1.2e-55 220.3 197 64.0
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 1.2e-55 220.3 180 65.6
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 1.2e-55 220.3 176 69.3
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 1.6e-55 219.9 182 64.3
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 2.7e-55 219.2 171 70.8
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 2.7e-55 219.2 174 67.8
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 2.7e-55 219.2 174 67.8
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 1.0e-54 217.2 167 71.3
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 1.0e-54 217.2 216 58.8
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 1.3e-54 216.9 173 65.9
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 3.9e-54 215.3 196 61.2
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 5.0e-54 214.9 193 62.2
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 5.0e-54 214.9 179 64.8
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 6.6e-54 214.5 200 61.5
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 6.6e-54 214.5 198 59.1
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 1.5e-53 213.4 167 68.3
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 2.5e-53 212.6 184 65.2
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 3.3e-53 212.2 170 67.1
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 7.3e-53 211.1 177 65.5
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 1.2e-52 210.3 184 64.7
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 1.6e-52 209.9 148 78.4
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.6e-52 208.8 199 60.3
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 6.2e-52 208.0 188 64.4
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 6.2e-52 208.0 171 67.8
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 1.4e-51 206.8 199 59.8
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 1.4e-51 206.8 183 61.7
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 1.8e-51 206.5 148 77.7
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 1.8e-51 206.5 121 82.6
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 1.8e-51 206.5 198 62.1
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.8e-51 206.5 128 78.9
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.1e-51 205.7 199 59.8
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 5.2e-51 204.9 185 63.2
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 5.2e-51 204.9 185 66.5
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 5.2e-51 204.9 196 59.7
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 6.8e-51 204.5 185 61.1
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 9.8e-50 200.7 175 64.0
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 1.3e-49 200.3 243 51.0
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 1.7e-49 199.9 168 63.7
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 1.7e-49 199.9 210 59.5
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 2.2e-49 199.5 112 86.6
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 2.9e-49 199.1 176 60.2
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 1.9e-48 196.4 163 65.0
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 5.4e-48 194.9 179 60.3
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 1.2e-47 193.7 113 83.2
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 2.7e-47 192.6 113 83.2
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 3.5e-47 192.2 198 58.6
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 7.8e-47 191.0 113 81.4
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.0e-46 190.7 169 63.3
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 1.3e-46 190.3 113 80.5
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 2.3e-46 189.5 198 58.1
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 6.6e-46 188.0 112 80.4
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.4e-43 180.3 161 61.5
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 3.4e-42 175.6 118 73.7
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 3.7e-41 172.2 178 52.8
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 9.2e-40 167.5 144 61.1
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 4.6e-39 165.2 198 54.0
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 9.5e-37 157.5 92 81.5
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 1.2e-36 157.1 110 68.2
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 2.8e-36 156.0 142 65.5
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 8.1e-36 154.5 92 80.4
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 8.9e-35 151.0 126 58.7
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 8.9e-35 151.0 88 83.0
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 1.2e-34 150.6 98 78.6
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 6.4e-33 144.8 92 78.3
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.9e-29 133.3 100 61.0
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 2.5e-29 132.9 142 57.0
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 4.3e-29 132.1 90 70.0
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 3.6e-28 129.0 101 58.4
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 5.2e-27 125.2 99 58.6
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 8.9e-27 124.4 97 58.8
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 1.2e-26 124.0 70 80.0
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 1.4e-24 117.1 70 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 7.1e-24 114.8 111 54.1
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 3.5e-23 112.5 181 38.7
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 1.8e-19 100.1 92 57.6
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 5.5e-08 62.0 85 35.3
Medtr4g010890 Medicago truncatula HOM05D006274 ORTHO05D007782 1.6e-07 60.5 106 42.5


User provided reference genes

Program Settings