Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 0.0e+00 1169.1 590 100.0
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 3.0e-297 1024.6 597 87.1
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 4.3e-272 941.0 589 80.3
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 9.0e-270 933.3 591 80.7
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 5.1e-257 891.0 593 75.4
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 4.2e-251 871.3 613 72.8
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.7e-244 849.4 594 72.9
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 7.2e-243 844.0 592 73.0
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 1.4e-241 839.7 592 72.6
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 1.8e-241 839.3 596 72.5
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 3.9e-241 838.2 597 71.9
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 2.7e-234 815.5 599 71.0
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 9.7e-224 780.4 594 68.2
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 4.7e-218 761.5 593 64.9
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 4.4e-216 755.0 594 65.2
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.7e-215 753.1 596 64.6
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 1.1e-214 750.4 601 64.4
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 1.8e-214 749.6 596 64.8
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 4.5e-213 745.0 596 65.1
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 6.5e-212 741.1 593 63.2
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 7.2e-211 737.6 593 63.7
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.7e-210 734.9 593 63.4
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 4.0e-209 731.9 599 63.1
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 1.5e-208 729.9 598 62.9
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 2.0e-208 729.6 594 63.1
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 2.6e-208 729.2 597 63.0
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 3.4e-208 728.8 595 62.7
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.7e-208 728.0 593 62.7
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 9.8e-208 727.2 598 62.7
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.8e-207 725.7 596 61.9
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 3.7e-207 725.3 599 62.3
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.1e-206 723.8 593 62.9
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 1.4e-206 723.4 597 64.5
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 2.4e-206 722.6 599 61.9
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 9.2e-206 720.7 621 61.4
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 2.7e-205 719.2 595 62.5
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 2.3e-204 716.1 597 62.3
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 2.9e-204 715.7 598 61.5
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.5e-203 713.4 670 56.3
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 2.5e-203 712.6 595 61.2
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 2.3e-201 706.1 595 61.0
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 8.9e-201 704.1 597 60.5
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.2e-200 703.7 629 59.5
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 1.5e-200 703.4 595 61.3
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 1.3e-199 700.3 590 59.7
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 8.3e-199 697.6 592 59.3
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.8e-198 696.4 595 61.7
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 4.1e-198 695.3 592 59.0
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 4.1e-198 695.3 596 59.9
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.2e-197 693.7 597 60.3
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 2.7e-197 692.6 596 59.6
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 1.7e-196 689.9 595 60.0
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 2.3e-196 689.5 666 54.5
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 5.0e-196 688.3 593 59.2
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.5e-195 686.8 596 59.6
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.5e-195 686.8 596 59.7
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.5e-195 686.0 594 58.4
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 4.3e-195 685.3 595 60.2
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 5.6e-195 684.9 595 58.7
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.2e-194 683.7 594 59.1
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.2e-192 677.2 595 58.3
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 1.5e-192 676.8 593 59.4
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.3e-191 673.7 595 58.2
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.2e-189 667.2 594 58.1
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.2e-189 667.2 594 57.4
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 1.6e-189 666.8 595 57.3
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 2.7e-189 666.0 610 56.6
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 1.7e-188 663.3 596 57.2
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 8.6e-188 661.0 594 55.6
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 3.3e-187 659.1 559 60.6
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 9.5e-187 657.5 596 56.2
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.2e-186 657.1 595 56.3
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 4.7e-186 655.2 595 56.5
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 8.1e-186 654.4 597 57.0
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.4e-185 653.7 599 57.8
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.4e-185 653.7 596 57.4
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 2.3e-185 652.9 596 57.0
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 5.2e-185 651.7 591 56.3
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 5.2e-185 651.7 596 57.0
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 5.2e-185 651.7 630 54.1
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 6.8e-185 651.4 596 56.9
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 6.8e-185 651.4 603 56.1
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 2.6e-184 649.4 603 55.9
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.4e-184 649.0 597 57.5
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 3.4e-184 649.0 597 57.5
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 4.4e-184 648.7 596 57.9
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 5.8e-184 648.3 601 56.6
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 2.9e-183 646.0 597 57.1
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.3e-180 637.1 611 54.5
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.3e-180 636.3 591 55.7
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 3.3e-179 632.5 594 55.4
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.6e-179 631.7 554 59.2
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 2.8e-178 629.4 563 58.1
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 2.0e-176 623.2 594 54.5
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.3e-175 620.5 503 64.2
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 8.6e-172 607.8 533 58.9
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 4.9e-167 592.0 595 52.6
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 7.1e-166 588.2 577 54.4
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 3.8e-159 565.8 610 48.5
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 3.0e-156 556.2 604 48.8
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 2.5e-155 553.1 551 54.1
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 2.4e-153 546.6 625 48.6
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 3.1e-153 546.2 551 53.5
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 1.5e-152 543.9 596 49.2
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 5.3e-145 518.8 446 60.3
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 3.2e-142 509.6 593 47.7
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 7.1e-142 508.4 420 63.3
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 7.1e-142 508.4 599 45.1
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-141 506.5 518 52.7
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 3.0e-140 503.1 468 58.3
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 1.1e-137 494.6 545 51.0
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 6.9e-121 438.7 607 41.5
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.2e-120 438.0 383 58.5
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 2.9e-111 406.8 575 41.9
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.3e-108 397.1 602 41.2
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 7.5e-107 392.1 280 69.3
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 6.1e-101 372.5 610 37.7
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.2e-99 368.2 600 40.0
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 1.1e-94 351.7 408 50.7
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 8.3e-90 335.5 249 66.7
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.0e-88 330.9 302 54.3
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.3e-87 328.2 321 55.8
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 2.1e-85 320.9 613 35.4
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 3.3e-78 297.0 461 41.0
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 3.5e-72 276.9 613 32.0
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.6e-69 266.9 250 57.2
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.1e-60 238.8 427 39.1
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 1.5e-54 218.4 167 64.1
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 6.2e-53 213.0 284 43.7
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 6.4e-50 203.0 566 30.9
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.4e-49 201.8 287 42.9
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 4.6e-48 196.8 131 68.7
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.7e-40 171.0 145 53.8
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 3.0e-39 167.5 134 59.7
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.5e-38 165.2 128 64.1
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 1.6e-37 161.8 385 31.9
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 6.2e-37 159.8 286 38.1
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 2.1e-32 144.8 116 62.9
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 2.5e-25 121.3 94 58.5
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 4.2e-25 120.6 153 40.5
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 5.7e-22 110.2 85 58.8
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 1.5e-19 102.1 875 21.6
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 3.4e-19 100.9 84 61.9
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 2.3e-15 88.2 108 47.2
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 9.1e-12 76.3 55 58.2
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 2.0e-11 75.1 108 40.7
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.4e-11 74.3 88 44.3
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 5.5e-09 67.0 43 67.4
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 5.5e-09 67.0 43 67.4
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 5.5e-09 67.0 114 35.1
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 5.5e-09 67.0 114 35.1
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 2.7e-08 64.7 42 66.7
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 4.7e-08 63.9 42 66.7
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 7.9e-08 63.2 57 50.9


User provided reference genes

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