Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G139600 Phaseolus vulgaris HOM05D001486 ORTHO05D031489 1.3e-73 279.6 144 100.0
Phvul.002G321100 Phaseolus vulgaris HOM05D001486 ORTHO05D003845 2.4e-27 125.9 98 72.4
VMungo0251G2427 Vigna mungo HOM05D001486 ORTHO05D003845 1.1e-24 117.1 96 69.8
Glyma.05G238700 Glycine max HOM05D001486 ORTHO05D003845 3.8e-20 102.1 87 65.5
Lj4g0000437 Lotus japonicus HOM05D001486 ORTHO05D003845 6.0e-18 94.7 98 59.2
arahy.Tifrunner.gnm1.ann1.56F275 Arachis hypogaea HOM05D001486 ORTHO05D003845 1.0e-17 94.0 96 58.3
arahy.Tifrunner.gnm1.ann1.JC79MH Arachis hypogaea HOM05D001486 ORTHO05D003845 1.0e-17 94.0 96 58.3
Lalb_Chr04g0258641 Lupinus albus HOM05D001486 ORTHO05D003845 1.5e-16 90.1 92 56.5
Cfa015023 Carpinus fangiana HOM05D001486 ORTHO05D003845 2.5e-16 89.4 95 52.6
CiPaw.06G051700 Carya illinoinensis HOM05D001486 ORTHO05D003845 3.3e-16 89.0 92 56.5
COL.COLO4_16586 Corchorus olitorius HOM05D001486 ORTHO05D003845 3.3e-16 89.0 92 53.3
arahy.Tifrunner.gnm1.ann1.G5DQ32 Arachis hypogaea HOM05D001486 ORTHO05D031489 7.3e-16 87.8 84 58.3
Ciclev10014409m.g Citrus clementina HOM05D001486 ORTHO05D003845 2.1e-15 86.3 94 53.2
Manes.17G083800 Manihot esculenta HOM05D001486 ORTHO05D003845 2.8e-15 85.9 96 54.2
Haze_10882 Corylus avellana HOM05D001486 ORTHO05D003845 3.6e-15 85.5 99 51.5
QL03p035767 Quercus lobata HOM05D001486 ORTHO05D003845 6.2e-15 84.7 151 40.4
Thecc.02G292300 Theobroma cacao HOM05D001486 ORTHO05D003845 8.1e-15 84.3 92 54.3
Glyma.02G085000 Glycine max HOM05D001486 ORTHO05D003845 1.4e-14 83.6 92 55.4
Dinv07731 Davidia involucrata HOM05D001486 ORTHO05D003845 1.8e-14 83.2 98 52.0
Duzib248G0925 Durio zibethinus HOM05D001486 ORTHO05D003845 1.8e-14 83.2 92 53.3
Lalb_Chr10g0095731 Lupinus albus HOM05D001486 ORTHO05D003845 2.4e-14 82.8 90 53.3
Psat7g008000 Pisum sativum HOM05D001486 ORTHO05D003845 3.1e-14 82.4 84 53.6
Ca_12547_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 4.0e-14 82.0 85 56.5
CsaV3_5G036990 Cucumis sativus L. HOM05D001486 ORTHO05D003845 4.0e-14 82.0 90 52.2
MELO3C026439.2 Cucumis melo HOM05D001486 ORTHO05D003845 5.3e-14 81.6 84 54.8
Dinv10476 Davidia involucrata HOM05D001486 ORTHO05D003845 6.9e-14 81.3 94 52.1
Lalb_Chr16g0387531 Lupinus albus HOM05D001486 ORTHO05D003845 1.2e-13 80.5 91 54.9
Gohir.A01G147000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.0e-13 79.7 95 50.5
Cc11_g07260 Coffea canephora HOM05D001486 ORTHO05D003845 2.6e-13 79.3 94 53.2
Lj3C864T11 Lonicera japonica HOM05D001486 ORTHO05D003845 3.4e-13 79.0 96 50.0
Lalb_Chr09g0330901 Lupinus albus HOM05D001486 ORTHO05D003845 3.4e-13 79.0 94 51.1
Medtr8g105270 Medicago truncatula HOM05D001486 ORTHO05D003845 3.4e-13 79.0 96 52.1
Sed0013183 Sechium edule HOM05D001486 ORTHO05D003845 3.4e-13 79.0 89 49.4
Hma1.2p1_0705F.1_g206960 Hydrangea macrophylla HOM05D001486 ORTHO05D003845 4.5e-13 78.6 93 52.7
Phvul.003G019400 Phaseolus vulgaris HOM05D001486 ORTHO05D003845 4.5e-13 78.6 97 54.6
RcHm_v2.0_Chr4g0443071 Rosa chinensis HOM05D001486 ORTHO05D003845 4.5e-13 78.6 93 48.4
Gohir.D01G140100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 5.8e-13 78.2 95 49.5
Sabra10G0077900 Salix brachista HOM05D001486 ORTHO05D003845 5.8e-13 78.2 99 52.5
vmacro10692 Vaccinium macrocarpon HOM05D001486 ORTHO05D003845 5.8e-13 78.2 92 53.3
Gorai.002G172300 Gossypium raimondii HOM05D001486 ORTHO05D003845 7.6e-13 77.8 95 49.5
PGR142G0042 Punica granatum HOM05D001486 ORTHO05D003845 7.6e-13 77.8 93 49.5
Nn3g18359 Nelumbo nucifera HOM05D001486 ORTHO05D003845 9.9e-13 77.4 99 46.5
CSS0045072 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 1.3e-12 77.0 93 52.7
Duzib251G0612 Durio zibethinus HOM05D001486 ORTHO05D003845 1.3e-12 77.0 90 51.1
Potri.008G134600 Populus trichocarpa HOM05D001486 ORTHO05D003845 1.3e-12 77.0 96 49.0
Medtr1g032110 Medicago truncatula HOM05D001486 ORTHO05D003845 1.7e-12 76.6 91 51.6
ClCG07G005650 Citrullus lanatus HOM05D001486 ORTHO05D003845 2.2e-12 76.3 90 50.0
CANSAT01G1659 Cannabis sativa HOM05D001486 ORTHO05D003845 2.9e-12 75.9 90 50.0
Atru.chr11.926 Acer truncatum HOM05D001486 ORTHO05D003845 3.8e-12 75.5 94 47.9
TPR.G20324 Trifolium pratense HOM05D001486 ORTHO05D031489 3.8e-12 75.5 87 51.7
TAR629G1492 Trochodendron aralioides HOM05D001486 ORTHO05D003845 3.8e-12 75.5 100 45.0
Gohir.A12G152100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 4.9e-12 75.1 92 50.0
ECA233G3229 Erigeron canadensis HOM05D001486 ORTHO05D003845 6.4e-12 74.7 83 54.2
Peaxi162Scf00376g00836 Petunia axillaris HOM05D001486 ORTHO05D003845 6.4e-12 74.7 94 48.9
Solyc04g008010.4 Solanum lycopersicum HOM05D001486 ORTHO05D003845 6.4e-12 74.7 91 50.5
Eucgr.G02107 Eucalyptus grandis HOM05D001486 ORTHO05D003845 8.4e-12 74.3 100 47.0
Aa31LG2G8200 Aethionema arabicum HOM05D001486 ORTHO05D003845 1.1e-11 73.9 85 48.2
MSTRG.7612 Avicennia marina HOM05D001486 ORTHO05D003845 1.1e-11 73.9 82 51.2
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 1.4e-11 73.6 93 46.2
Sopen04g003150 Solanum pennellii HOM05D001486 ORTHO05D003845 1.4e-11 73.6 91 50.5
Aqoxy3G00010 Aquilegia oxysepala HOM05D001486 ORTHO05D003845 1.9e-11 73.2 98 44.9
Nn4g24361 Nelumbo nucifera HOM05D001486 ORTHO05D003845 2.4e-11 72.8 100 42.0
FvH4_4g33570 Fragaria vesca HOM05D001486 ORTHO05D003845 3.2e-11 72.4 95 46.3
FAN12G1020 Fragaria x ananassa HOM05D001486 ORTHO05D003845 3.2e-11 72.4 95 46.3
FAN17G1742 Fragaria x ananassa HOM05D001486 ORTHO05D003845 3.2e-11 72.4 95 46.3
Gorai.008G168200 Gossypium raimondii HOM05D001486 ORTHO05D003845 3.2e-11 72.4 92 48.9
PGSC0003DMG401029470 Solanum tuberosum HOM05D001486 ORTHO05D003845 3.2e-11 72.4 91 49.5
TAR371G0986 Trochodendron aralioides HOM05D001486 ORTHO05D003845 4.2e-11 72.0 94 47.9
Ca_17256_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 5.4e-11 71.6 93 48.4
Ca_17278_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 5.4e-11 71.6 93 48.4
PSO063G0325 Papaver somniferum HOM05D001486 ORTHO05D003845 5.4e-11 71.6 78 55.1
PSO782G0639 Papaver somniferum HOM05D001486 ORTHO05D003845 5.4e-11 71.6 78 55.1
Sed0004382 Sechium edule HOM05D001486 ORTHO05D003845 5.4e-11 71.6 69 55.1
THA.LOC104805083 Tarenaya hassleriana HOM05D001486 ORTHO05D003845 5.4e-11 71.6 86 48.8
CAN.G3126.1 Capsicum annuum HOM05D001486 ORTHO05D003845 7.1e-11 71.2 103 44.7
Duzib268G0262 Durio zibethinus HOM05D001486 ORTHO05D003845 7.1e-11 71.2 83 53.0
Nitab4.5_0002803g0060 Nicotiana tabacum HOM05D001486 ORTHO05D003845 7.1e-11 71.2 91 48.4
MBI19_g37990_MAGBIO Magnolia biondii HOM05D001486 ORTHO05D003845 9.3e-11 70.9 96 44.8
CAN.G74.5 Capsicum annuum HOM05D001486 ORTHO05D003845 1.2e-10 70.5 91 48.4
Lj2g0001507 Lotus japonicus HOM05D001486 ORTHO05D003845 1.2e-10 70.5 93 51.6
Potri.010G106700 Populus trichocarpa HOM05D001486 ORTHO05D003845 1.2e-10 70.5 99 50.5
Oeu059515.2 Olea europaea HOM05D001486 ORTHO05D003845 2.1e-10 69.7 90 50.0
SalBow2G3384 Salvia bowleyana HOM05D001486 ORTHO05D003845 2.1e-10 69.7 93 47.3
Sopen05g014620 Solanum pennellii HOM05D001486 ORTHO05D003845 2.1e-10 69.7 98 50.0
Ah.03g137420 Amaranthus hybridus HOM05D001486 ORTHO05D003845 2.7e-10 69.3 93 46.2
DCAR_030270 Daucus carota HOM05D001486 ORTHO05D003845 4.6e-10 68.6 95 44.2
FAN22G2360 Fragaria x ananassa HOM05D001486 ORTHO05D003845 6.0e-10 68.2 94 44.7
Nitab4.5_0005073g0010 Nicotiana tabacum HOM05D001486 ORTHO05D003845 6.0e-10 68.2 92 46.7
CARHR144260 Cardamine hirsuta HOM05D001486 ORTHO05D003845 7.9e-10 67.8 92 45.7
Gorai.009G330200 Gossypium raimondii HOM05D001486 ORTHO05D003845 7.9e-10 67.8 92 46.7
Gorai.012G182400 Gossypium raimondii HOM05D001486 ORTHO05D003845 7.9e-10 67.8 90 46.7
VMungo1215G0637 Vigna mungo HOM05D001486 ORTHO05D003845 7.9e-10 67.8 93 50.5
GSVIVG01011664001 Vitis vinifera HOM05D001486 ORTHO05D003845 1.3e-09 67.0 98 44.9
ECA246G3923 Erigeron canadensis HOM05D001486 ORTHO05D003845 1.8e-09 66.6 97 44.3
HanXRQChr15g0476741 Helianthus annuus HOM05D001486 ORTHO05D003845 1.8e-09 66.6 78 51.3
Actinidia38441 Actinidia chinensis HOM05D001486 ORTHO05D003845 2.3e-09 66.2 74 56.8
Gohir.A04G142700 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.3e-09 66.2 91 45.1
Gohir.D04G186000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 3.0e-09 65.9 90 45.6
MD13G1020500 Malus domestica HOM05D001486 ORTHO05D003845 3.0e-09 65.9 97 45.4
Psat6g046320 Pisum sativum HOM05D001486 ORTHO05D003845 3.0e-09 65.9 92 44.6
Gohir.A05G308900 Gossypium hirsutum HOM05D001486 ORTHO05D003845 3.9e-09 65.5 92 45.7
Manes.15G134100 Manihot esculenta HOM05D001486 ORTHO05D003845 5.1e-09 65.1 90 45.6
Gohir.D05G309600 Gossypium hirsutum HOM05D001486 ORTHO05D003845 6.7e-09 64.7 92 45.7
Nitab4.5_0002414g0110 Nicotiana tabacum HOM05D001486 ORTHO05D003845 6.7e-09 64.7 91 47.3
Prupe.1G333200 Prunus persica HOM05D001486 ORTHO05D003845 6.7e-09 64.7 93 44.1
Hund24926 Selenicereus undatus HOM05D001486 ORTHO05D003845 8.7e-09 64.3 91 47.3
Sp2g13150 Schrenkiella parvula HOM05D001486 ORTHO05D003845 1.5e-08 63.5 87 48.3
AL5G10790 Arabidopsis lyrata HOM05D001486 ORTHO05D003845 1.9e-08 63.2 91 46.2
MD16G1018900 Malus domestica HOM05D001486 ORTHO05D003845 1.9e-08 63.2 93 43.0
THA.LOC104824128 Tarenaya hassleriana HOM05D001486 ORTHO05D003845 2.5e-08 62.8 94 43.6
ATR0753G082 Amborella trichopoda HOM05D001486 ORTHO05D003845 3.3e-08 62.4 106 36.8
SEGI_09588 Sequoiadendron giganteum HOM05D001486 ORTHO05D003845 3.3e-08 62.4 92 41.3
DCAR_007328 Daucus carota HOM05D001486 ORTHO05D003845 5.6e-08 61.6 90 43.3
Sc14g0006830 Simmondsia chinensis HOM05D001486 ORTHO05D003845 5.6e-08 61.6 98 39.8
SGA_v2.0_scaffold151G36774 Striga asiatica HOM05D001486 ORTHO05D003845 5.6e-08 61.6 95 44.2
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 7.4e-08 61.2 75 49.3
BcaB07g30379 Brassica carinata HOM05D001486 ORTHO05D003845 7.4e-08 61.2 89 48.3
BcaC03g17068 Brassica carinata HOM05D001486 ORTHO05D003845 7.4e-08 61.2 91 47.3
A02p32260 Brassica napus HOM05D001486 ORTHO05D003845 7.4e-08 61.2 89 46.1
C02p49860 Brassica napus HOM05D001486 ORTHO05D003845 7.4e-08 61.2 89 46.1
BolC2t11065H Brassica oleracea HOM05D001486 ORTHO05D003845 7.4e-08 61.2 91 47.3
AagrBONN_evm.TU.Sc2ySwM_228.2276 Anthoceros agrestis HOM05D001486 ORTHO05D003845 9.6e-08 60.8 99 38.4
HPP92_024794 Vanilla planifolia HOM05D001486 ORTHO05D003845 9.6e-08 60.8 96 41.7
BcaC06g31283 Brassica carinata HOM05D001486 ORTHO05D003845 1.3e-07 60.5 100 43.0
CAN.G406.6 Capsicum annuum HOM05D001486 ORTHO05D003845 1.3e-07 60.5 96 44.8
Thhalv10003708m.g Eutrema salsugineum HOM05D001486 ORTHO05D003845 1.3e-07 60.5 88 45.5
HPP92_024797 Vanilla planifolia HOM05D001486 ORTHO05D003845 1.3e-07 60.5 96 41.7
HanXRQChr17g0567281 Helianthus annuus HOM05D001486 ORTHO05D003845 1.6e-07 60.1 66 56.1
Hma1.2p1_0940F.1_g239580 Hydrangea macrophylla HOM05D001486 ORTHO05D003845 2.1e-07 59.7 72 48.6
Lsat_1_v5_gn_3_53381 Lactuca sativa HOM05D001486 ORTHO05D003845 2.1e-07 59.7 127 37.8
Migut.E00480 Erythranthe guttata HOM05D001486 ORTHO05D003845 2.8e-07 59.3 95 41.1
Peaxi162Scf00337g00815 Petunia axillaris HOM05D001486 ORTHO05D003845 2.8e-07 59.3 77 45.5
Sed0007618 Sechium edule HOM05D001486 ORTHO05D003845 2.8e-07 59.3 69 49.3
EL10Ac6g14120 Beta vulgaris HOM05D001486 ORTHO05D003845 3.7e-07 58.9 85 43.5
HanXRQChr08g0212491 Helianthus annuus HOM05D001486 ORTHO05D003845 4.8e-07 58.5 89 44.9
Lsat_1_v5_gn_8_46261 Lactuca sativa HOM05D001486 ORTHO05D003845 4.8e-07 58.5 76 53.9
AT2G01690 Arabidopsis thaliana HOM05D001486 ORTHO05D003845 8.1e-07 57.8 97 41.2
BraA02t08243Z Brassica rapa HOM05D001486 ORTHO05D003845 8.1e-07 57.8 89 44.9
Os03g0223700 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D003845 8.1e-07 57.8 85 49.4
BcaC06g34133 Brassica carinata HOM05D001486 ORTHO05D003845 1.4e-06 57.0 81 46.9
TWI53G1320 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 1.4e-06 57.0 136 35.3
A09p23570 Brassica napus HOM05D001486 ORTHO05D003845 1.8e-06 56.6 79 48.1
BraA09t37961Z Brassica rapa HOM05D001486 ORTHO05D003845 1.8e-06 56.6 79 48.1
BcaB07g30727 Brassica carinata HOM05D001486 ORTHO05D003845 2.4e-06 56.2 86 47.7
BcaC04g21556 Brassica carinata HOM05D001486 ORTHO05D003845 2.4e-06 56.2 79 48.1
C09p30410 Brassica napus HOM05D001486 ORTHO05D003845 2.4e-06 56.2 79 48.1
BolC9t55904H Brassica oleracea HOM05D001486 ORTHO05D003845 2.4e-06 56.2 79 48.1
Carub.0005s0064 Capsella rubella HOM05D001486 ORTHO05D003845 2.4e-06 56.2 74 47.3
Nitab4.5_0005571g0010 Nicotiana tabacum HOM05D001486 ORTHO05D003845 2.4e-06 56.2 88 43.2
TWI77G0357 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 2.4e-06 56.2 136 34.6
Aa31LG1G250 Aethionema arabicum HOM05D001486 ORTHO05D003845 4.0e-06 55.5 84 41.7
A06p44170 Brassica napus HOM05D001486 ORTHO05D003845 4.0e-06 55.5 90 43.3
BraA06t27292Z Brassica rapa HOM05D001486 ORTHO05D003845 4.0e-06 55.5 90 43.3
C07p32330 Brassica napus HOM05D001486 ORTHO05D003845 5.3e-06 55.1 81 45.7
BolC7t43769H Brassica oleracea HOM05D001486 ORTHO05D003845 5.3e-06 55.1 81 45.7
Lsat_1_v5_gn_4_12500 Lactuca sativa HOM05D001486 ORTHO05D003845 5.3e-06 55.1 67 52.2
Hund20674 Selenicereus undatus HOM05D001486 ORTHO05D003845 5.3e-06 55.1 78 41.0
SMO134G0279 Selaginella moellendorffii HOM05D001486 ORTHO05D003845 6.9e-06 54.7 145 30.3
Oeu044012.1 Olea europaea HOM05D001486 ORTHO05D003845 9.0e-06 54.3 88 43.2


User provided reference genes

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