Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 1.6e-95 352.8 184 100.0
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.6e-87 326.2 184 90.8
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 2.5e-77 292.4 184 85.9
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.2e-74 283.5 185 83.2
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 1.3e-62 243.4 187 73.8
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 5.1e-62 241.5 178 74.7
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 1.1e-61 240.4 178 73.0
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 3.3e-61 238.8 196 68.9
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 4.4e-58 228.4 175 69.7
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 6.4e-57 224.6 157 75.8
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 8.4e-57 224.2 157 73.2
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 8.4e-57 224.2 181 66.3
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 3.2e-56 222.2 215 60.9
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 4.2e-56 221.9 156 76.3
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 5.4e-56 221.5 188 66.5
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 1.2e-55 220.3 155 71.6
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 1.6e-55 219.9 181 65.7
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.6e-55 219.9 215 60.0
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 2.1e-55 219.5 221 58.4
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 2.1e-55 219.5 155 71.6
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 2.7e-55 219.2 157 69.4
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 3.5e-55 218.8 155 71.0
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 7.9e-55 217.6 155 71.0
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.0e-54 217.2 155 72.3
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 1.0e-54 217.2 155 72.9
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 1.3e-54 216.9 215 57.7
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 1.3e-54 216.9 217 56.2
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.3e-54 216.9 197 60.9
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.7e-54 216.5 155 70.3
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 1.7e-54 216.5 156 71.2
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 2.3e-54 216.1 155 71.0
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 2.3e-54 216.1 155 70.3
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 2.3e-54 216.1 157 70.7
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 2.3e-54 216.1 156 71.2
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 3.0e-54 215.7 156 71.2
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 5.1e-54 214.9 156 70.5
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 5.1e-54 214.9 155 69.7
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 5.1e-54 214.9 155 71.6
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 8.7e-54 214.2 155 71.6
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.1e-53 213.8 156 71.2
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 1.5e-53 213.4 155 71.0
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.9e-53 213.0 157 70.7
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.9e-53 213.0 157 70.7
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 2.5e-53 212.6 155 71.6
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.5e-53 212.6 197 62.4
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 3.3e-53 212.2 210 60.5
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.3e-53 211.8 157 70.1
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 4.3e-53 211.8 192 60.9
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 5.6e-53 211.5 157 70.1
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 7.3e-53 211.1 214 56.1
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.6e-52 209.9 155 68.4
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 2.8e-52 209.1 194 59.8
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.8e-52 209.1 196 60.2
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.8e-52 209.1 155 68.4
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.6e-52 208.8 203 61.6
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.6e-52 208.8 177 62.7
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 3.6e-52 208.8 177 62.7
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 4.8e-52 208.4 155 67.1
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 4.8e-52 208.4 155 69.0
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 6.2e-52 208.0 155 67.1
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.4e-51 206.8 154 66.9
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.4e-51 206.1 157 65.6
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 3.1e-51 205.7 205 56.1
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.0e-51 205.3 201 55.2
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 4.0e-51 205.3 157 65.6
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.3e-51 204.9 157 65.0
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 6.9e-51 204.5 155 65.2
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.9e-51 204.5 199 57.8
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 9.0e-51 204.1 190 58.4
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 9.0e-51 204.1 201 55.7
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 9.0e-51 204.1 177 61.0
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 9.0e-51 204.1 156 67.3
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.2e-50 203.8 155 65.8
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.2e-50 203.8 155 65.8
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 1.5e-50 203.4 212 55.7
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.5e-50 203.4 199 56.8
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.5e-50 203.4 198 58.6
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.6e-50 202.6 213 57.3
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 4.5e-50 201.8 145 71.0
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 7.6e-50 201.1 225 55.6
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.3e-49 200.3 215 54.4
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 1.3e-49 200.3 181 61.9
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 1.7e-49 199.9 194 57.2
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.7e-49 199.9 204 57.4
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 3.8e-49 198.7 156 62.2
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 6.4e-49 198.0 186 57.5
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 6.4e-49 198.0 155 63.2
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 6.4e-49 198.0 155 63.2
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 6.4e-49 198.0 145 68.3
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 6.4e-49 198.0 145 68.3
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 6.4e-49 198.0 155 63.9
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 8.4e-49 197.6 202 55.9
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.4e-48 196.8 206 52.4
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 2.4e-48 196.1 155 62.6
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 3.2e-48 195.7 190 56.3
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 3.2e-48 195.7 203 53.7
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 7.1e-48 194.5 155 61.3
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 7.1e-48 194.5 155 61.3
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 9.3e-48 194.1 202 54.0
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 1.2e-47 193.7 145 68.3
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.6e-47 193.4 155 62.6
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.7e-47 192.6 147 66.7
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 3.5e-47 192.2 188 53.7
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 3.5e-47 192.2 154 62.3
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 7.9e-47 191.0 149 62.4
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 7.9e-47 191.0 149 62.4
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 7.9e-47 191.0 149 62.4
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 1.8e-46 189.9 202 52.0
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 3.9e-46 188.7 156 60.3
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 3.9e-46 188.7 149 61.1
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 3.9e-46 188.7 149 61.1
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 3.9e-46 188.7 146 63.7
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.5e-45 186.0 157 64.3
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.3e-44 183.7 137 69.3
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 6.2e-44 181.4 218 51.8
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 5.3e-43 178.3 170 55.9
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 2.6e-42 176.0 165 55.8
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 5.8e-42 174.9 151 60.3
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.7e-41 173.3 125 71.2
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.7e-41 173.3 183 55.2
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.2e-41 172.9 208 49.0
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.2e-41 172.9 208 49.0
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.9e-41 171.8 144 64.6
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 8.4e-41 171.0 125 70.4
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 5.5e-40 168.3 125 68.0
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 7.1e-40 167.9 125 67.2
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 6.0e-39 164.9 157 52.2
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 6.0e-39 164.9 127 66.9
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.9e-39 164.5 118 70.3
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.3e-38 163.7 125 67.2
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 3.9e-38 162.2 125 64.8
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 2.8e-36 156.0 137 58.4
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.7e-33 146.7 162 47.5
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.2e-33 146.4 106 71.7
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.9e-33 146.0 106 71.7
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 2.9e-33 146.0 151 54.3
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 2.9e-33 146.0 151 54.3
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 2.1e-31 139.8 108 66.7
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 2.7e-31 139.4 160 45.6
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 3.0e-30 136.0 160 46.2
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 1.5e-29 133.7 156 45.5
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.6e-28 130.2 201 39.8
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 5.0e-25 118.6 153 45.8
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 6.5e-25 118.2 153 46.4
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 8.5e-25 117.9 171 46.8
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 4.6e-23 112.1 143 46.2
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 4.5e-18 95.5 70 62.9
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.1e-11 74.3 184 27.7


User provided reference genes

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