Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 1.9e-103 380.6 499 100.0
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 1.3e-64 251.5 461 94.6
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 2.0e-52 211.1 460 85.0
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 7.4e-39 166.0 454 77.1
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 4.0e-37 160.2 453 74.2
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 3.8e-35 153.7 452 80.3
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 6.4e-35 152.9 453 49.9
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 7.9e-33 146.0 454 78.6
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 3.1e-29 134.0 81 77.8
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 2.1e-25 121.3 183 72.7
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 2.3e-24 117.9 447 77.0
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.5e-23 115.2 81 66.7
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 5.7e-23 113.2 81 65.4
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 1.3e-22 112.1 447 65.3
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.1e-22 111.3 81 67.9
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 3.7e-22 110.5 76 68.4
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 4.8e-22 110.2 80 68.8
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 8.2e-22 109.4 79 67.1
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 1.4e-21 108.6 451 79.4
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 1.8e-21 108.2 80 66.2
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 2.4e-21 107.8 77 66.2
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 1.5e-20 105.1 80 65.0
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 5.9e-20 103.2 77 66.2
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 5.9e-20 103.2 80 61.2
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 1.0e-19 102.4 80 62.5
Lalb_Chr19g0127261 Lupinus albus HOM05D005674 ORTHO05D007015 1.0e-19 102.4 159 39.6
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 1.7e-19 101.7 195 56.4
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.9e-19 100.9 78 64.1
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 2.9e-19 100.9 80 58.8
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 6.5e-19 99.8 80 61.2
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 8.5e-19 99.4 81 60.5
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 8.5e-19 99.4 76 61.8
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 1.1e-18 99.0 80 58.8
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 9.3e-18 95.9 81 55.6
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.2e-17 95.5 80 55.0
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.2e-17 95.5 80 56.2
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 1.2e-17 95.5 80 60.0
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.2e-17 95.5 79 59.5
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.2e-17 95.5 77 57.1
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 2.7e-17 94.4 80 53.8
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 2.7e-17 94.4 81 53.1
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 3.6e-17 94.0 79 55.7
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 4.6e-17 93.6 81 50.6
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 4.6e-17 93.6 78 59.0
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 7.9e-17 92.8 78 55.1
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 1.3e-16 92.0 80 56.2
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 2.3e-16 91.3 79 54.4
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 3.0e-16 90.9 71 62.0
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 3.0e-16 90.9 79 54.4
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 3.9e-16 90.5 79 55.7
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.9e-16 90.5 81 46.9
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 3.9e-16 90.5 81 46.9
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 5.1e-16 90.1 80 55.0
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 5.1e-16 90.1 81 48.1
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 1.5e-15 88.6 72 61.1
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.9e-15 88.2 77 57.1
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.9e-15 88.2 179 43.6
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.9e-15 88.2 80 50.0
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 2.5e-15 87.8 79 55.7
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.5e-15 87.8 180 70.0
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.3e-15 87.0 80 50.0
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 9.7e-15 85.9 80 50.0
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 9.7e-15 85.9 171 71.9
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.3e-14 85.5 171 72.5
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.3e-14 85.5 171 72.5
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 1.3e-14 85.5 171 72.5
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.3e-14 85.5 171 72.5
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.3e-14 85.5 171 72.5
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.3e-14 85.5 79 49.4
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.3e-14 85.5 79 49.4
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.6e-14 85.1 77 53.2
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 2.2e-14 84.7 180 68.9
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 2.8e-14 84.3 77 55.8
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 2.8e-14 84.3 77 48.1
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 3.7e-14 84.0 171 71.3
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 3.7e-14 84.0 180 68.9
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 3.7e-14 84.0 454 60.8
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.7e-14 84.0 78 50.0
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 6.3e-14 83.2 81 45.7
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 6.3e-14 83.2 81 45.7
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 6.3e-14 83.2 81 54.3
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 8.2e-14 82.8 81 45.7
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 8.2e-14 82.8 81 45.7
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.8e-13 81.6 180 67.2
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 2.4e-13 81.3 171 56.1
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 3.1e-13 80.9 172 67.4
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 3.1e-13 80.9 78 47.4
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 3.1e-13 80.9 79 53.2
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.1e-13 80.5 79 45.6
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 6.9e-13 79.7 171 68.4
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 9.0e-13 79.3 78 46.2
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 1.5e-12 78.6 79 51.9
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 2.0e-12 78.2 81 43.2
Lalb_Chr02g0154491 Lupinus albus HOM05D005674 ORTHO05D007015 2.6e-12 77.8 60 61.7
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 3.4e-12 77.4 173 54.3
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 3.4e-12 77.4 80 50.0
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 3.4e-12 77.4 80 50.0
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 5.9e-12 76.6 171 54.4
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 1.0e-11 75.9 172 54.7
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 1.0e-11 75.9 172 54.7
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.0e-11 75.9 75 45.3
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.0e-11 75.9 75 45.3
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.2e-11 74.7 77 44.2
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 2.9e-11 74.3 78 44.9
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 5.0e-11 73.6 172 52.9
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 5.0e-11 73.6 172 52.9
Lalb_Chr02g0159181 Lupinus albus HOM05D005674 ORTHO05D007015 5.0e-11 73.6 59 64.4
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 5.0e-11 73.6 75 49.3
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 6.5e-11 73.2 72 51.4
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 3.2e-10 70.9 77 49.4
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 7.2e-10 69.7 77 42.9
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.2e-09 68.9 77 44.2
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 1.6e-09 68.6 66 50.0
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 4.6e-09 67.0 78 42.3
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 6.1e-09 66.6 77 42.9
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 6.1e-09 66.6 48 64.6
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 6.1e-09 66.6 77 41.6
Psat0s3054g0080 Pisum sativum HOM05D005674 ORTHO05D007015 7.9e-09 66.2 35 85.7
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 1.4e-08 65.5 81 33.3
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 3.0e-08 64.3 46 67.4
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 6.7e-08 63.2 46 60.9
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.1e-07 62.4 73 41.1
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 2.6e-07 61.2 46 65.2
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.4e-07 60.5 46 63.0
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.4e-07 60.5 46 63.0
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 9.7e-07 59.3 46 63.0
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 9.7e-07 59.3 47 57.4
Lalb_Chr12g0209451 Lupinus albus HOM05D005674 ORTHO05D007015 6.3e-06 56.6 53 52.8
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 8.2e-06 56.2 62 50.0


User provided reference genes

Program Settings