Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 2.7e-112 408.7 205 100.0
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 8.1e-85 317.4 193 84.5
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 1.9e-81 306.2 187 84.0
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 1.5e-75 286.6 193 74.6
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 2.9e-74 282.3 226 65.9
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 5.6e-70 268.1 191 68.6
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 5.5e-65 251.5 192 65.1
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 2.1e-61 239.6 195 63.1
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 5.0e-58 228.4 184 65.2
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 5.7e-54 214.9 184 62.0
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 3.7e-53 212.2 193 59.6
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 4.2e-49 198.7 186 53.8
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 1.0e-47 194.1 198 49.5
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 8.8e-47 191.0 193 52.8
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 2.6e-46 189.5 196 54.1
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 7.4e-46 188.0 200 53.5
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 2.2e-45 186.4 191 52.9
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 4.8e-45 185.3 196 50.0
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 6.3e-45 184.9 171 56.7
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 1.4e-44 183.7 196 51.5
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 4.1e-44 182.2 187 52.4
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.4e-43 179.1 188 48.4
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 5.9e-43 178.3 193 50.8
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 5.9e-43 178.3 187 51.3
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 7.7e-43 177.9 187 51.3
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 2.9e-42 176.0 196 48.5
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 3.8e-42 175.6 196 52.6
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 1.4e-41 173.7 187 50.8
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 7.2e-41 171.4 192 46.9
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 2.1e-40 169.9 187 48.1
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 3.6e-40 169.1 197 47.2
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 5.2e-39 165.2 194 46.9
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 6.7e-39 164.9 186 48.9
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 8.8e-39 164.5 197 47.7
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 8.8e-39 164.5 188 45.7
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 9.7e-38 161.0 196 43.9
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 1.2e-35 154.1 188 46.8
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 1.2e-35 154.1 185 44.9
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 7.7e-35 151.4 163 49.7
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.8e-34 149.1 215 40.0
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 6.5e-34 148.3 190 43.2
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 4.2e-33 145.6 215 39.5
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 2.7e-32 142.9 194 40.2
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 3.6e-32 142.5 162 48.8
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 3.0e-31 139.4 186 42.5
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.2e-30 137.5 157 46.5
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 5.7e-30 135.2 192 42.2
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 3.7e-29 132.5 185 38.4
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 5.3e-28 128.6 186 37.6
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 9.1e-28 127.9 186 39.8
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.6e-27 127.1 187 36.9
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 3.8e-26 122.5 187 36.9
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 1.1e-25 120.9 157 43.3
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 1.9e-25 120.2 194 37.6
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 3.2e-25 119.4 181 38.7
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 9.4e-25 117.9 187 34.8
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 1.6e-24 117.1 156 45.5
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 3.6e-24 115.9 188 39.4
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 4.7e-24 115.5 185 40.5
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 8.0e-24 114.8 188 34.6
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 1.0e-23 114.4 176 39.2
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 2.3e-23 113.2 148 41.9
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 3.0e-23 112.8 194 37.6
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 6.8e-23 111.7 132 50.0
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 8.8e-23 111.3 162 42.6
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.2e-22 110.9 126 42.9
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.0e-22 110.2 196 35.2
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 4.4e-22 109.0 184 36.4
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 4.4e-22 109.0 174 39.7
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 9.8e-22 107.8 194 34.0
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 1.3e-21 107.5 183 36.1
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 1.3e-21 107.5 167 37.1
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.7e-21 107.1 162 40.7
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 2.8e-21 106.3 105 49.5
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.8e-21 106.3 179 37.4
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 1.1e-20 104.4 189 31.7
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.1e-20 104.4 182 34.6
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 1.1e-20 104.4 126 44.4
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 1.1e-20 104.4 162 40.7
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 1.4e-20 104.0 188 35.6
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 2.4e-20 103.2 200 34.5
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 4.1e-20 102.4 126 42.1
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 4.1e-20 102.4 189 37.6
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 5.4e-20 102.1 189 38.1
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.0e-19 100.1 189 36.5
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 2.7e-19 99.8 188 33.5
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 4.5e-19 99.0 187 34.8
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 4.5e-19 99.0 124 37.9
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 5.9e-19 98.6 122 38.5
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 7.7e-19 98.2 189 35.4
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.7e-18 97.1 198 34.8
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.3e-18 96.7 185 34.6
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.3e-18 96.7 187 33.7
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.9e-18 96.3 186 34.4
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.9e-18 96.3 186 34.4
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 6.5e-18 95.1 124 40.3
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.1e-17 94.4 150 38.0
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.1e-17 94.4 188 34.6
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.9e-17 93.6 190 33.2
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 2.5e-17 93.2 180 37.2
VMungo1309G3162 Vigna mungo HOM05D005772 ORTHO05D006468 3.2e-17 92.8 71 71.8
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 5.5e-17 92.0 181 36.5
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 1.2e-16 90.9 129 44.2
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 1.6e-16 90.5 129 37.2
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 3.6e-16 89.4 172 32.0
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 8.0e-16 88.2 123 43.9
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.3e-15 86.7 104 42.3
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 3.0e-15 86.3 181 32.6
unitig_22.g6227 Utricularia gibba HOM05D005772 ORTHO05D006468 4.0e-15 85.9 65 53.8
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 9.8e-14 81.3 151 34.4
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 9.8e-14 81.3 146 34.9
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 9.8e-14 81.3 146 34.9
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 9.8e-14 81.3 146 34.9
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 1.7e-13 80.5 125 37.6
Sed0012770 Sechium edule HOM05D005772 ORTHO05D006468 1.7e-13 80.5 138 39.1
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 3.7e-13 79.3 131 41.2
Haze_17513 Corylus avellana HOM05D000187 ORTHO05D000926 6.3e-13 78.6 191 29.8
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 8.3e-13 78.2 184 29.9
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 1.4e-12 77.4 198 29.3
Solyc11g018470.3 Solanum lycopersicum HOM05D005772 ORTHO05D006468 2.4e-12 76.6 135 37.0
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 3.1e-12 76.3 183 30.1
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 5.4e-12 75.5 154 29.9
Nitab4.5_0003012g0080 Nicotiana tabacum HOM05D005772 ORTHO05D006468 5.9e-11 72.0 50 62.0
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 1.3e-10 70.9 176 31.2
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 2.9e-10 69.7 160 28.8
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 6.6e-10 68.6 193 31.6
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 2.8e-08 63.2 166 34.3
Lsat_1_v5_gn_8_150021 Lactuca sativa HOM05D041600 ORTHO05D006468 1.4e-07 60.8 122 36.1
Medtr3g088090 Medicago truncatula HOM05D005772 ORTHO05D006468 9.8e-06 54.7 53 58.5


User provided reference genes

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