Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.5e-110 402.9 211 100.0
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.4e-87 326.6 213 84.5
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 8.7e-74 280.8 215 75.3
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 3.4e-70 268.9 215 75.3
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 2.2e-69 266.2 225 64.9
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.7e-61 240.0 229 67.7
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.6e-59 233.4 231 65.4
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 6.7e-58 228.0 206 59.7
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 9.6e-57 224.2 219 65.3
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 5.3e-55 218.4 216 57.4
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 5.8e-54 214.9 214 57.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 3.8e-53 212.2 229 55.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.1e-52 210.7 215 57.7
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.9e-52 209.9 216 55.6
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.9e-52 209.9 210 61.0
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.5e-52 209.5 211 63.5
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 4.2e-52 208.8 214 59.3
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.1e-49 200.7 207 58.0
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.9e-49 199.9 222 58.1
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 3.3e-49 199.1 224 57.6
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 7.4e-49 198.0 210 54.8
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.3e-48 197.2 222 52.7
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.8e-48 196.1 201 57.2
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.8e-48 196.1 201 57.2
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 4.8e-48 195.3 226 53.1
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 4.1e-47 192.2 218 54.6
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 4.1e-47 192.2 233 52.8
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 6.9e-47 191.4 228 51.3
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.0e-46 189.9 201 55.2
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.0e-46 189.9 215 51.2
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.6e-46 189.5 211 50.2
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 2.6e-46 189.5 202 56.4
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.6e-46 189.5 202 54.0
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.4e-46 189.1 219 53.0
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 5.8e-46 188.3 223 54.3
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 7.6e-46 188.0 208 51.9
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.0e-45 187.6 219 52.5
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-45 187.6 202 53.5
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.3e-45 187.2 186 56.5
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.3e-45 187.2 219 52.5
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.7e-45 186.8 202 53.5
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 6.5e-45 184.9 219 52.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 6.5e-45 184.9 221 50.2
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 8.4e-45 184.5 185 54.1
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.1e-44 184.1 215 53.0
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.9e-44 183.3 212 50.5
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 3.2e-44 182.6 209 50.7
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.2e-43 180.6 208 50.0
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.6e-43 180.3 200 50.5
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.1e-43 179.9 210 50.5
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.7e-43 179.5 219 49.8
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 7.9e-43 177.9 211 50.7
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 7.9e-43 177.9 211 50.7
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 1.8e-42 176.8 233 50.2
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 3.9e-42 175.6 222 50.5
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 5.1e-42 175.3 204 49.0
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.1e-41 174.1 204 49.0
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.5e-41 173.7 216 50.5
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.3e-41 172.6 226 48.7
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-40 170.6 214 50.0
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.8e-40 169.5 221 49.8
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.7e-40 169.1 209 50.2
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.8e-40 168.7 220 46.8
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 4.8e-40 168.7 235 52.3
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 4.8e-40 168.7 207 48.8
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.1e-39 167.5 228 46.5
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.4e-39 167.2 230 47.4
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.4e-39 167.2 230 47.4
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 5.3e-39 165.2 213 46.5
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.0e-38 163.3 210 47.6
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 5.9e-38 161.8 231 45.0
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.3e-37 160.6 209 44.0
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 3.2e-36 156.0 253 48.6
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 7.2e-36 154.8 206 43.7
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.2e-35 154.1 215 52.6
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 2.1e-35 153.3 206 43.2
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 6.1e-35 151.8 211 46.0
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.0e-34 151.0 208 47.6
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.8e-34 150.2 214 46.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 3.9e-34 149.1 205 45.4
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.1e-33 147.5 208 46.6
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.5e-33 146.4 214 44.4
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 2.5e-33 146.4 218 44.5
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 2.5e-33 146.4 217 43.3
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 5.7e-33 145.2 215 43.3
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 9.7e-33 144.4 214 43.9
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 9.7e-33 144.4 212 43.9
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 4.8e-32 142.1 215 43.3
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 8.2e-32 141.4 215 42.3
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.1e-31 141.0 192 48.4
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.4e-31 140.6 217 42.4
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.8e-31 140.2 212 43.4
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.8e-31 140.2 212 43.4
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.4e-31 139.8 209 43.1
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.3e-31 138.7 210 42.4
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 5.3e-31 138.7 246 38.6
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 9.1e-31 137.9 212 42.9
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 9.1e-31 137.9 212 42.9
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 9.1e-31 137.9 149 57.7
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.2e-30 137.5 257 38.5
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.0e-30 136.7 225 43.6
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.6e-30 136.3 211 42.2
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.6e-30 136.3 211 42.2
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.6e-30 136.3 211 42.2
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 5.9e-30 135.2 210 49.5
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.3e-29 134.0 188 45.2
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-29 134.0 211 41.7
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.3e-29 134.0 211 41.7
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 1.3e-29 134.0 196 42.3
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-29 133.7 210 41.9
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.2e-29 133.3 214 42.1
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.9e-29 132.9 214 41.6
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 5.0e-29 132.1 208 46.6
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 6.5e-29 131.7 215 41.4
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 6.5e-29 131.7 215 41.4
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 6.5e-29 131.7 215 41.4
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.1e-28 131.0 234 41.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.9e-28 130.2 215 40.9
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.2e-28 129.4 181 42.5
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 7.2e-28 128.3 263 36.1
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 9.4e-28 127.9 197 41.6
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.6e-27 127.1 205 41.5
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-27 127.1 201 41.3
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 2.7e-27 126.3 201 39.3
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 4.7e-27 125.6 195 46.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.3e-26 123.2 197 40.1
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 2.3e-26 123.2 211 45.0
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 8.8e-26 121.3 199 40.7
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.5e-25 120.6 182 42.3
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.3e-25 119.4 187 42.8
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 3.7e-24 115.9 137 54.0
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 8.2e-24 114.8 200 38.5
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.1e-23 112.8 177 45.8
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 7.0e-23 111.7 196 39.8
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.0e-23 111.7 177 45.2
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 7.0e-23 111.7 199 39.7
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 7.0e-23 111.7 196 38.3
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.1e-23 111.3 209 42.1
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 5.9e-22 108.6 106 55.7
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.9e-21 106.3 175 40.6
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 6.5e-21 105.1 99 60.6
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 3.2e-20 102.8 193 40.9
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 9.4e-20 101.3 106 55.7
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 6.7e-18 95.1 218 37.2
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 3.3e-17 92.8 143 46.2
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 4.4e-17 92.4 93 46.2
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 7.5e-17 91.7 204 35.8
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 9.7e-17 91.3 213 34.7
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 9.7e-17 91.3 204 29.9
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.2e-16 90.1 167 35.9
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 2.2e-16 90.1 93 47.3
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.4e-15 86.7 159 37.7
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 1.6e-14 84.0 131 46.6
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.0e-14 83.6 201 33.3
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.0e-14 83.6 172 33.1
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.6e-14 83.2 202 31.7
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-13 80.5 177 34.5
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-13 80.5 177 34.5
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.2e-13 80.1 174 32.2
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 2.2e-13 80.1 177 33.9
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.2e-13 80.1 174 32.2
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.2e-13 80.1 177 35.6
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.8e-13 79.3 180 33.3
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.8e-13 79.3 138 43.5
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.5e-12 76.6 204 28.9
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 9.4e-12 74.7 83 55.4
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 3.6e-11 72.8 180 32.2
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.0e-10 71.2 175 30.3
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.3e-08 64.3 260 32.7
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.4e-07 60.8 149 28.9
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.8e-07 60.5 112 35.7


User provided reference genes

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