Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 6.7e-232 807.0 407 100.0
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 1.5e-202 709.5 409 88.8
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 3.6e-185 651.7 416 82.5
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 3.2e-157 558.9 412 71.8
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 1.3e-155 553.5 421 72.0
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 9.0e-152 540.8 409 71.6
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 2.4e-149 532.7 368 76.1
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 4.0e-144 515.4 414 67.4
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.7e-142 510.0 413 67.8
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 3.0e-139 499.2 414 63.8
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 5.1e-139 498.4 421 64.6
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 3.7e-137 492.3 412 63.3
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 2.4e-136 489.6 409 65.3
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 4.5e-135 485.3 414 63.3
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 2.5e-133 479.6 415 62.7
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.5e-133 479.6 414 62.1
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 2.1e-132 476.5 414 62.6
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 3.5e-132 475.7 417 62.1
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 3.5e-132 475.7 415 61.2
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 3.0e-131 472.6 417 61.9
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 1.9e-130 469.9 410 62.9
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 1.6e-129 466.8 419 60.9
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 1.6e-129 466.8 413 61.0
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 1.6e-129 466.8 328 72.3
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 2.1e-129 466.5 413 60.8
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 5.3e-128 461.8 417 60.9
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 5.3e-128 461.8 386 64.8
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 1.2e-127 460.7 414 61.1
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 1.5e-127 460.3 409 64.3
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 1.5e-127 460.3 393 64.4
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 1.3e-126 457.2 337 69.1
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 1.7e-126 456.8 416 60.3
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 2.2e-126 456.4 413 59.8
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.5e-126 454.9 386 63.0
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 8.4e-126 454.5 389 62.0
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 3.5e-124 449.1 477 54.9
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 4.6e-124 448.7 412 59.7
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 6.0e-124 448.4 389 61.7
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 7.9e-124 448.0 441 57.6
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 1.3e-123 447.2 413 58.6
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 2.3e-123 446.4 415 58.1
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 8.7e-123 444.5 410 61.5
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 1.6e-121 440.3 365 64.4
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 1.6e-121 440.3 430 58.1
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 9.0e-120 434.5 414 58.2
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 2.6e-119 433.0 420 59.8
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 1.9e-117 426.8 416 57.9
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 2.5e-117 426.4 416 54.1
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.5e-117 426.4 410 57.1
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 5.5e-117 425.2 426 55.6
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 7.9e-116 421.4 414 53.9
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 7.9e-116 421.4 461 53.6
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.8e-115 420.2 408 56.4
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 5.1e-115 418.7 411 59.1
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 6.7e-115 418.3 411 56.7
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.7e-113 413.7 407 57.5
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 3.7e-113 412.5 364 58.5
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 6.3e-113 411.8 318 65.7
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 1.4e-112 410.6 415 54.2
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 1.4e-112 410.6 336 65.2
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 1.8e-112 410.2 410 54.6
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 4.1e-112 409.1 413 55.0
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 1.0e-110 404.4 415 53.3
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 8.5e-110 401.4 354 59.9
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 1.4e-109 400.6 349 59.0
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 1.9e-109 400.2 406 54.4
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 9.4e-109 397.9 409 54.0
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 1.0e-107 394.4 405 54.1
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 1.8e-107 393.7 425 52.0
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 5.1e-107 392.1 404 54.2
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 1.1e-106 391.0 412 52.9
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 2.0e-106 390.2 346 59.2
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 7.4e-106 388.3 425 51.8
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 1.3e-105 387.5 409 53.8
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 1.7e-105 387.1 409 53.8
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.4e-104 384.0 410 51.5
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 9.1e-104 381.3 410 53.7
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 2.0e-103 380.2 417 51.6
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 2.6e-103 379.8 410 52.4
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 3.5e-103 379.4 409 53.3
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 4.5e-103 379.0 410 53.4
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 7.7e-103 378.3 365 57.8
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 8.5e-102 374.8 385 56.9
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 5.2e-99 365.5 441 49.9
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 3.3e-98 362.8 377 52.5
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 7.4e-98 361.7 335 60.3
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.3e-97 360.9 415 49.9
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 1.1e-96 357.8 407 51.1
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 2.1e-92 343.6 416 48.3
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 8.3e-89 331.6 250 67.2
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 3.1e-88 329.7 424 47.9
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 9.4e-85 318.2 421 45.4
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 1.6e-84 317.4 419 45.6
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 9.5e-77 291.6 317 49.8
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 1.8e-75 287.3 243 59.7
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 9.2e-72 275.0 191 70.7
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.2e-71 274.6 336 46.1
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.5e-69 266.9 195 67.2
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 9.5e-61 238.4 168 67.9
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 3.7e-57 226.5 339 39.2
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 2.4e-56 223.8 318 44.7
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 4.6e-55 219.5 350 36.3
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 3.3e-53 213.4 384 36.5
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.4e-40 171.4 140 63.6
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 4.2e-40 169.9 116 69.8
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.1e-39 167.5 144 59.0
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.3e-36 158.3 175 53.7
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.6e-36 156.8 123 65.0
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 7.6e-34 149.1 132 57.6
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 9.9e-34 148.7 194 46.4
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 9.9e-34 148.7 134 58.2
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 7.1e-32 142.5 223 40.4
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 1.1e-29 135.2 120 59.2
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 2.6e-26 124.0 164 47.6
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 3.4e-26 123.6 181 35.4
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-23 115.2 137 50.4
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 1.1e-21 108.6 220 35.5
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.3e-21 106.7 77 63.6
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 9.0e-19 99.0 61 73.8
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.5e-18 96.7 61 72.1
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 2.5e-16 90.9 80 60.0
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 4.2e-16 90.1 275 27.6
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 2.1e-12 77.8 78 52.6
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 4.1e-11 73.6 100 47.0
Psat7g019440 Pisum sativum HOM05D006199 ORTHO05D006558 6.1e-07 59.7 81 48.1
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 2.3e-06 57.8 84 44.0
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 2.3e-06 57.8 55 54.5


User provided reference genes

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