Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 8.2e-85 317.0 159 100.0
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 1.9e-73 279.3 157 89.2
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 1.5e-70 269.6 159 87.4
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 3.1e-68 261.9 162 84.0
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 2.7e-59 232.3 173 71.7
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 3.0e-55 218.8 175 67.4
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 2.0e-54 216.1 171 67.8
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 4.4e-54 214.9 197 62.4
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 7.3e-49 197.6 178 63.5
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 4.4e-46 188.3 146 69.9
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 1.6e-43 179.9 138 68.8
arahy.Tifrunner.gnm1.ann1.B4TR6Y Arachis hypogaea HOM05D005992 ORTHO05D007476 2.5e-41 172.6 171 59.1
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 9.8e-38 160.6 152 60.5
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 1.7e-34 149.8 159 57.2
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 3.0e-34 149.1 168 56.0
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 3.0e-34 149.1 174 52.9
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 3.9e-34 148.7 176 51.1
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 6.6e-34 147.9 174 52.9
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 8.6e-34 147.5 172 52.9
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 2.5e-33 146.0 174 51.7
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 5.6e-33 144.8 169 51.5
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 4.7e-32 141.7 174 50.6
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 6.2e-32 141.4 170 51.8
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 8.1e-32 141.0 176 51.7
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 8.1e-32 141.0 176 51.7
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.3e-31 139.4 172 50.6
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 9.9e-30 134.0 175 48.0
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 1.3e-29 133.7 171 50.3
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 1.7e-29 133.3 169 52.7
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 4.9e-29 131.7 135 57.8
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 8.4e-29 131.0 142 54.2
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 3.2e-28 129.0 176 47.2
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.2e-27 127.1 171 49.1
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.2e-27 127.1 168 48.8
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 1.6e-27 126.7 166 48.2
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 4.6e-27 125.2 171 49.7
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 1.0e-26 124.0 155 51.0
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 1.0e-26 124.0 181 50.8
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 2.3e-26 122.9 142 50.0
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 6.6e-26 121.3 170 48.2
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 1.9e-25 119.8 170 47.6
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 1.9e-25 119.8 151 51.7
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 2.5e-25 119.4 170 47.6
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 2.5e-25 119.4 170 47.6
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 4.3e-25 118.6 170 47.1
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 5.6e-25 118.2 164 47.6
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 5.6e-25 118.2 170 48.8
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 5.6e-25 118.2 158 46.2
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 7.3e-25 117.9 170 47.1
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 3.6e-24 115.5 181 44.2
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 4.7e-24 115.2 169 47.3
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 4.7e-24 115.2 168 47.0
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 6.2e-24 114.8 161 43.5
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 6.2e-24 114.8 158 48.1
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 8.1e-24 114.4 169 46.7
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 8.1e-24 114.4 133 49.6
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 8.1e-24 114.4 149 47.0
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.1e-23 114.0 158 48.1
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 1.4e-23 113.6 160 50.6
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 1.8e-23 113.2 177 44.6
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 2.4e-23 112.8 160 50.0
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 2.4e-23 112.8 140 52.1
SalBow6G0883 Salvia bowleyana HOM05D005992 ORTHO05D007476 4.0e-23 112.1 182 42.3
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 8.9e-23 110.9 131 53.4
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 8.9e-23 110.9 163 44.2
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 1.5e-22 110.2 150 46.7
TAR362G0776 Trochodendron aralioides HOM05D005992 ORTHO05D007476 1.5e-22 110.2 101 61.4
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 2.0e-22 109.8 171 45.0
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 2.6e-22 109.4 159 44.7
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 3.4e-22 109.0 127 54.3
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 3.4e-22 109.0 156 49.4
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.4e-22 109.0 170 44.7
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 4.4e-22 108.6 158 45.6
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 7.6e-22 107.8 160 45.0
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 2.9e-21 105.9 160 44.4
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 3.8e-21 105.5 177 44.6
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 4.9e-21 105.1 146 45.9
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 4.9e-21 105.1 146 45.9
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 4.2e-20 102.1 168 42.3
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 7.1e-20 101.3 171 44.4
SalBow2G0316 Salvia bowleyana HOM05D005992 ORTHO05D007476 1.6e-19 100.1 212 35.8
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 3.5e-19 99.0 141 46.8
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 4.6e-19 98.6 136 44.9
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 3.9e-18 95.5 125 48.0
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 5.1e-18 95.1 139 44.6
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 8.7e-18 94.4 119 49.6
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 1.9e-17 93.2 173 42.8
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 2.8e-16 89.4 227 34.4
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 4.8e-16 88.6 154 40.9
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 1.4e-15 87.0 126 46.0
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 9.0e-15 84.3 222 34.7
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 2.6e-14 82.8 134 40.3
Hma1.2p1_1756F.1_g301045 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.3e-13 80.5 104 51.9
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.7e-13 80.1 129 38.8
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 3.8e-13 79.0 112 45.5
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 8.4e-13 77.8 81 53.1
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 2.4e-12 76.3 112 44.6
Oeu064700.1 Olea europaea HOM05D005992 ORTHO05D007476 2.4e-12 76.3 103 45.6
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 1.2e-11 73.9 128 39.1
PGSC0003DMG400020300 Solanum tuberosum HOM05D005992 ORTHO05D007476 1.0e-10 70.9 98 45.9
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 4.3e-09 65.5 112 41.1
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 9.6e-09 64.3 63 52.4
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 1.6e-08 63.5 115 40.0
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 6.2e-08 61.6 112 36.6
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 6.2e-08 61.6 112 41.1
CDE06G0073 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 1.2e-06 57.4 74 47.3
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 9.9e-06 54.3 55 49.1


User provided reference genes

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