Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 1.7e-86 323.2 230 100.0
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 2.1e-73 279.6 228 67.1
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 1.1e-69 267.3 231 74.0
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 1.1e-69 267.3 230 73.5
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 2.4e-69 266.2 231 74.0
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 3.1e-69 265.8 230 73.0
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 5.4e-69 265.0 230 70.4
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 7.0e-69 264.6 230 76.5
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 1.2e-68 263.8 230 73.9
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.6e-68 263.5 230 75.7
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.6e-68 263.5 230 75.7
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 1.6e-68 263.5 227 73.1
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 3.5e-68 262.3 227 79.7
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 5.9e-68 261.5 227 70.5
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 2.9e-67 259.2 227 70.0
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 2.9e-67 259.2 230 67.8
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 1.1e-66 257.3 228 67.5
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 4.2e-66 255.4 230 69.6
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 5.5e-66 255.0 230 74.8
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 2.1e-65 253.1 230 70.9
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 2.1e-65 253.1 230 69.1
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 2.8e-65 252.7 230 67.0
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 1.4e-64 250.4 228 68.9
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 5.2e-64 248.4 228 65.8
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 8.9e-64 247.7 230 73.0
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 1.2e-63 247.3 231 72.7
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 1.5e-63 246.9 228 62.3
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 4.4e-63 245.4 229 64.6
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 7.5e-63 244.6 230 66.5
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 9.8e-63 244.2 226 71.7
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 9.8e-63 244.2 230 75.7
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 1.4e-61 240.4 230 70.9
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 3.1e-61 239.2 230 73.0
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 2.0e-60 236.5 226 66.8
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.3e-59 233.8 235 64.7
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 2.9e-59 232.6 230 73.0
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.9e-59 232.6 230 70.4
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 5.0e-59 231.9 226 69.0
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 1.5e-58 230.3 229 65.1
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.5e-58 230.3 229 64.2
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 2.5e-58 229.6 229 70.7
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 3.3e-58 229.2 229 63.8
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 5.6e-58 228.4 230 80.4
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 7.3e-58 228.0 229 63.8
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 9.5e-58 227.6 229 67.2
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.8e-57 226.1 230 69.1
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 3.6e-57 225.7 230 71.7
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 3.6e-57 225.7 230 71.7
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 8.0e-57 224.6 225 63.1
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 1.0e-56 224.2 231 71.4
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.0e-56 224.2 225 66.7
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 2.3e-56 223.0 228 65.8
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 2.3e-56 223.0 226 65.5
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 8.9e-56 221.1 228 63.2
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 8.9e-56 221.1 229 69.0
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 1.5e-55 220.3 228 69.3
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 2.0e-55 219.9 228 71.9
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 2.6e-55 219.5 228 68.0
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 3.4e-55 219.2 228 61.4
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 5.8e-55 218.4 228 61.0
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 9.8e-55 217.6 225 65.3
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 9.8e-55 217.6 230 68.7
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 9.8e-55 217.6 227 58.1
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.7e-54 216.9 230 64.3
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.7e-54 216.9 222 68.0
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.7e-54 216.9 226 65.5
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 3.7e-54 215.7 230 63.5
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 8.3e-54 214.5 225 59.1
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.1e-53 214.2 228 64.9
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.1e-53 214.2 227 71.4
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.1e-53 214.2 225 64.0
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 1.9e-53 213.4 228 71.1
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.4e-53 213.0 230 70.4
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 3.2e-53 212.6 230 67.0
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 7.0e-53 211.5 230 67.4
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 9.2e-53 211.1 228 67.5
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.7e-52 209.5 155 73.5
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 4.6e-52 208.8 227 63.9
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 6.0e-52 208.4 229 65.1
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 7.8e-52 208.0 227 58.6
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 2.3e-51 206.5 230 63.5
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 1.1e-50 204.1 245 58.0
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 1.9e-50 203.4 230 66.1
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 1.6e-49 200.3 237 65.4
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 4.7e-49 198.7 230 72.2
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 4.7e-49 198.7 227 69.2
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 4.7e-49 198.7 230 64.8
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 6.2e-49 198.4 259 57.1
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 8.0e-49 198.0 230 60.0
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 8.0e-49 198.0 228 68.9
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 8.0e-49 198.0 223 52.0
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 1.1e-48 197.6 226 54.9
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 1.4e-48 197.2 249 55.0
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 1.4e-48 197.2 230 53.5
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.3e-48 196.4 228 68.0
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 8.9e-48 194.5 228 54.4
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 1.5e-47 193.7 226 67.7
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 3.4e-47 192.6 228 61.8
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 1.7e-46 190.3 233 60.1
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 1.9e-45 186.8 228 57.9
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 4.1e-45 185.7 331 49.2
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 7.0e-45 184.9 226 57.1
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 9.2e-45 184.5 226 67.3
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 2.1e-44 183.3 228 57.9
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 1.9e-42 176.8 227 64.8
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.6e-41 172.6 228 52.2
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.6e-41 172.6 228 53.1
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 4.7e-41 172.2 99 84.8
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 4.7e-41 172.2 228 48.7
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 1.8e-40 170.2 226 61.9
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 3.1e-40 169.5 226 60.6
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 3.1e-40 169.5 226 60.6
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 4.0e-40 169.1 226 61.5
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 3.9e-35 152.5 226 58.4
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.5e-34 150.6 188 61.7
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 8.9e-32 141.4 226 47.3
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 3.8e-30 136.0 211 54.0
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 3.9e-27 125.9 66 86.4
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 1.3e-25 120.9 79 73.4
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.5e-23 114.0 95 60.0
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 5.8e-23 112.1 226 45.1
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 2.2e-22 110.2 68 75.0
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 9.3e-21 104.8 129 44.2
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 7.8e-20 101.7 132 43.9
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.3e-19 100.9 125 50.4
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 6.6e-19 98.6 119 49.6
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.6e-17 94.0 122 47.5
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 1.0e-11 74.7 126 39.7
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 3.3e-10 69.7 93 52.7
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 1.8e-08 63.9 40 70.0
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 5.8e-07 58.9 78 42.3


User provided reference genes

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