Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 1.4e-44 182.6 94 100.0
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 4.8e-40 167.5 94 91.5
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 2.2e-37 158.7 94 88.3
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 2.9e-29 131.7 94 74.5
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 6.0e-27 124.0 95 75.8
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 7.9e-27 123.6 95 74.7
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 2.5e-25 118.6 95 69.5
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 3.3e-25 118.2 94 69.1
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 5.6e-25 117.5 94 70.2
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 7.4e-25 117.1 94 69.1
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 9.6e-25 116.7 95 70.5
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.7e-24 114.8 95 68.4
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.5e-22 109.4 96 66.7
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 2.6e-22 108.6 96 64.6
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 5.8e-22 107.5 96 67.7
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 4.9e-21 104.4 60 90.0
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 8.4e-21 103.6 94 64.9
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 8.4e-21 103.6 94 60.6
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 1.1e-20 103.2 96 63.5
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 1.1e-20 103.2 94 63.8
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.4e-20 102.8 97 62.9
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 1.4e-20 102.8 94 62.8
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.4e-20 102.8 97 63.9
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 1.4e-20 102.8 94 59.6
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 1.4e-20 102.8 94 59.6
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 2.5e-20 102.1 95 62.1
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 2.5e-20 102.1 94 59.6
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 3.2e-20 101.7 95 65.3
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 4.2e-20 101.3 94 62.8
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 5.5e-20 100.9 95 61.1
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 5.5e-20 100.9 95 62.1
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 5.5e-20 100.9 95 62.1
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 5.5e-20 100.9 94 60.6
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 7.1e-20 100.5 95 61.1
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 9.3e-20 100.1 118 52.5
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 9.3e-20 100.1 95 62.1
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 9.3e-20 100.1 92 62.0
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.2e-19 99.8 95 63.2
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 1.6e-19 99.4 94 61.7
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 1.6e-19 99.4 103 60.2
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 2.1e-19 99.0 95 61.1
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 2.7e-19 98.6 95 60.0
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 3.5e-19 98.2 99 61.6
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 3.5e-19 98.2 96 61.5
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 3.5e-19 98.2 95 62.1
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 3.5e-19 98.2 95 64.2
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 4.6e-19 97.8 95 61.1
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 4.6e-19 97.8 95 61.1
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 6.0e-19 97.4 95 60.0
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 6.0e-19 97.4 95 60.0
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 7.9e-19 97.1 95 61.1
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 7.9e-19 97.1 83 60.2
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.3e-18 96.3 100 58.0
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.3e-18 96.3 95 58.9
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.3e-18 96.3 95 58.9
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.3e-18 96.3 95 58.9
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.8e-18 95.9 96 63.5
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.8e-18 95.9 118 50.0
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.8e-18 95.9 99 63.6
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 2.3e-18 95.5 94 59.6
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 2.3e-18 95.5 94 59.6
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 3.0e-18 95.1 96 60.4
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 6.7e-18 94.0 86 62.8
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 8.7e-18 93.6 84 65.5
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 1.5e-17 92.8 94 59.6
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.3e-17 91.7 85 61.2
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.7e-17 90.9 84 63.1
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.3e-16 89.7 94 57.4
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.2e-16 89.0 85 62.4
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 2.8e-16 88.6 83 61.4
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 4.8e-16 87.8 94 59.6
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.4e-15 86.3 94 57.4
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 2.4e-15 85.5 99 57.6
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 2.4e-15 85.5 88 59.1
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 5.3e-15 84.3 86 58.1
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 6.9e-15 84.0 100 54.0
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 6.9e-15 84.0 83 57.8
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 9.0e-15 83.6 85 55.3
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.2e-14 83.2 83 57.8
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.2e-14 83.2 85 55.3
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.5e-14 82.8 84 61.9
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 2.0e-14 82.4 94 53.2
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.0e-14 82.4 77 62.3
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 2.0e-14 82.4 47 85.1
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 2.6e-14 82.0 47 87.2
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 3.4e-14 81.6 131 42.7
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 4.5e-14 81.3 85 57.6
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 5.9e-14 80.9 84 58.3
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 5.9e-14 80.9 85 60.0
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 7.7e-14 80.5 94 57.4
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.3e-13 79.7 47 85.1
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 1.3e-13 79.7 85 58.8
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 1.3e-13 79.7 83 56.6
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 2.2e-13 79.0 91 52.7
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 6.5e-13 77.4 83 51.8
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.4e-12 76.3 84 56.0
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 3.2e-12 75.1 83 54.2
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 5.5e-12 74.3 94 53.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 3.6e-11 71.6 109 44.0
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 4.6e-11 71.2 47 78.7
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 1.0e-10 70.1 45 77.8
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 3.0e-10 68.6 88 48.9
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 3.9e-10 68.2 103 42.7
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 5.1e-10 67.8 70 54.3
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 5.1e-10 67.8 70 54.3
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 5.1e-10 67.8 70 54.3
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 6.7e-10 67.4 70 54.3
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 6.7e-10 67.4 70 54.3
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 6.7e-10 67.4 70 54.3
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 6.7e-10 67.4 70 54.3
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 8.8e-10 67.0 80 51.2
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 8.8e-10 67.0 78 47.4
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.1e-09 66.6 91 45.1
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.1e-09 66.6 100 46.0
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.5e-09 66.2 100 41.0
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 2.0e-09 65.9 70 52.9
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 2.5e-09 65.5 70 51.4
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.5e-09 65.5 103 41.7
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 4.3e-09 64.7 98 45.9
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 4.3e-09 64.7 70 52.9
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 7.4e-09 63.9 103 40.8
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.7e-08 62.8 98 44.9
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.2e-08 62.4 98 44.9
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.2e-08 62.4 77 48.1
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.8e-08 62.0 94 45.7
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 2.8e-08 62.0 95 42.1
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 3.7e-08 61.6 62 56.5
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 3.7e-08 61.6 83 44.6
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 3.7e-08 61.6 96 43.8
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 3.7e-08 61.6 111 39.6
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 3.7e-08 61.6 106 41.5
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 4.8e-08 61.2 107 39.3
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 4.8e-08 61.2 71 49.3
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 8.2e-08 60.5 95 44.2
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 8.2e-08 60.5 73 47.9
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 1.1e-07 60.1 50 60.0
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 1.4e-07 59.7 78 51.3
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 1.4e-07 59.7 60 56.7
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.4e-07 59.7 108 40.7
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.8e-07 59.3 76 43.4
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 2.4e-07 58.9 91 38.5
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 2.4e-07 58.9 85 44.7
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 3.1e-07 58.5 60 56.7
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.1e-07 58.2 68 48.5
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 4.1e-07 58.2 92 46.7
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 5.3e-07 57.8 64 53.1
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 5.3e-07 57.8 59 55.9
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 5.3e-07 57.8 59 55.9
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 5.3e-07 57.8 94 43.6
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 5.3e-07 57.8 101 43.6
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 6.9e-07 57.4 101 41.6
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 9.1e-07 57.0 47 61.7
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 9.1e-07 57.0 47 61.7
Os02g0230000 Oryza sativa ssp. japonica HOM05D007429 ORTHO05D003505 9.1e-07 57.0 94 42.6
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 1.2e-06 56.6 54 51.9
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 1.2e-06 56.6 65 52.3
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.2e-06 56.6 78 46.2
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.2e-06 56.6 47 63.8
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 1.2e-06 56.6 47 63.8
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 1.2e-06 56.6 83 44.6
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 1.5e-06 56.2 44 72.7
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 2.0e-06 55.8 106 41.5
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 2.6e-06 55.5 63 52.4
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 2.6e-06 55.5 84 42.9
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 3.4e-06 55.1 74 43.2
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 3.4e-06 55.1 87 41.4
ATR0705G084 Amborella trichopoda HOM05D007429 ORTHO05D003505 4.5e-06 54.7 86 40.7
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 4.5e-06 54.7 103 39.8
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 4.5e-06 54.7 99 38.4
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 5.9e-06 54.3 63 50.8
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 5.9e-06 54.3 105 38.1
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 7.7e-06 53.9 66 47.0
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 7.7e-06 53.9 50 52.0
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 7.7e-06 53.9 41 61.0


User provided reference genes

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