Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 5.1e-114 414.5 216 100.0
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 1.4e-111 406.4 215 97.2
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.9e-108 396.0 216 94.4
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 2.5e-108 395.6 216 93.1
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.6e-107 392.9 216 92.6
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.8e-106 389.4 216 92.6
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 5.1e-106 387.9 215 92.6
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.1e-105 386.7 216 92.1
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.1e-105 386.7 216 92.1
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 1.1e-105 386.7 220 91.8
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 1.1e-105 386.7 216 91.7
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 2.6e-105 385.6 216 91.2
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 9.7e-105 383.6 216 90.7
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 9.7e-105 383.6 216 91.2
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.3e-104 383.3 216 91.7
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.3e-104 383.3 216 89.8
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.7e-104 382.9 216 90.7
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.7e-104 382.9 216 90.7
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 91.2
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 91.2
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 90.7
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 91.2
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 90.7
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 90.7
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.4e-103 379.8 216 89.8
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 90.7
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.8e-103 379.4 227 87.7
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 90.7
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 90.3
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 88.9
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 89.4
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 4.1e-103 378.3 216 88.0
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 4.1e-103 378.3 216 90.3
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 90.3
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 89.8
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 90.7
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.9
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 87.0
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 89.4
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 90.3
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 86.6
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 86.6
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 89.8
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 88.9
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 87.5
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 89.4
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 87.5
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 88.9
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 89.8
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 86.6
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.9
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.4
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 86.1
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 88.4
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 88.9
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 86.1
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 86.1
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 86.1
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 85.6
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 85.6
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 85.6
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.7e-101 372.9 215 87.4
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 87.5
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.0
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.9
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 87.5
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 88.9
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.6
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 87.5
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 84.7
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 84.7
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 84.7
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 85.6
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 87.0
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 89.4
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 87.5
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.1e-100 370.2 214 87.9
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 86.6
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 86.6
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 84.3
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 84.3
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 88.4
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 88.0
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 88.0
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 85.2
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 88.0
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 87.5
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 87.5
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 87.5
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 87.5
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 87.5
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 87.0
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 86.6
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 85.2
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.1e-99 365.9 215 87.0
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 87.0
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 87.0
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 86.6
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 84.3
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 86.6
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.6e-97 359.0 216 83.3
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 2.6e-97 359.0 221 84.6
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 4.4e-97 358.2 216 84.7
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.3e-96 356.7 221 82.8
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.8e-95 352.8 217 84.3
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 4.5e-94 348.2 216 85.2
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.3e-93 346.7 216 81.0
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.7e-93 346.3 199 89.9
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 6.5e-93 344.4 216 78.7
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 2.1e-91 339.3 216 83.3
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.7e-91 339.0 216 82.4
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 4.7e-91 338.2 216 82.4
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 4.7e-91 338.2 216 82.4
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 1.0e-90 337.0 221 80.1
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 4.0e-90 335.1 218 78.9
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 2.6e-89 332.4 216 79.6
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 77.8
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 2.4e-87 325.9 216 76.9
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 9.1e-87 323.9 216 76.4
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.6e-86 323.2 216 73.1
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.6e-86 323.2 216 76.4
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 3.5e-86 322.0 216 78.2
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 7.7e-86 320.9 181 88.4
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 8.5e-85 317.4 216 78.2
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 4.2e-84 315.1 215 77.7
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 4.7e-83 311.6 165 95.2
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 1.4e-82 310.1 165 93.3
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 1.8e-82 309.7 216 76.9
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 3.0e-82 308.9 165 92.7
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 9.8e-81 303.9 276 63.0
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 5.4e-79 298.1 216 75.5
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 2.0e-78 296.2 216 75.0
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.5e-76 290.0 216 73.1
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.6e-75 285.4 216 70.4
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 3.6e-75 285.4 216 70.8
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 2.3e-74 282.7 217 70.0
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 5.2e-74 281.6 217 67.3
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 6.8e-74 281.2 203 75.9
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.5e-73 280.0 216 71.8
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 2.2e-72 276.2 353 50.4
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 5.9e-70 268.1 180 82.2
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 9.5e-68 260.8 165 81.2
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 4.7e-67 258.5 144 82.6
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 5.8e-65 251.5 217 65.9
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 2.0e-57 226.5 217 55.8
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 7.1e-55 218.0 234 53.4
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 6.8e-50 201.4 273 51.3
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 2.2e-48 196.4 108 82.4
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 2.2e-48 196.4 108 82.4
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 5.4e-47 191.8 136 78.7
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 1.0e-45 187.6 219 47.5
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 2.3e-45 186.4 178 55.6
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.4e-42 177.2 135 73.3
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 6.0e-38 161.8 106 75.5
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 7.8e-38 161.4 178 54.5
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.0e-37 161.0 114 77.2
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 9.6e-36 154.5 101 84.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 9.6e-36 154.5 101 84.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 9.6e-36 154.5 101 84.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 9.6e-36 154.5 101 84.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 9.6e-36 154.5 101 84.2
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.3e-35 154.1 84 82.1
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.1e-34 151.0 81 85.2
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.5e-33 147.1 81 84.0
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 2.0e-25 120.2 71 70.4
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.5e-20 104.0 74 81.1
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.7e-19 99.4 63 87.3
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.9e-18 95.1 68 79.4
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 3.1e-10 69.7 39 76.9
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.2e-09 67.8 39 74.4
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 3.4e-09 66.2 48 66.7
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 3.4e-09 66.2 48 66.7
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 3.4e-09 66.2 48 66.7
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.3e-08 64.3 48 64.6


User provided reference genes

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