Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G106000 Phaseolus vulgaris HOM05D003251 ORTHO05D003770 5.3e-53 210.7 101 100.0
Phvul.006G023700 Phaseolus vulgaris HOM05D003251 ORTHO05D003770 1.0e-43 179.9 117 77.8
VMungo0540G1164 Vigna mungo HOM05D003251 ORTHO05D003770 1.4e-42 176.0 117 75.2
Glyma.18G111600 Glycine max HOM05D003251 ORTHO05D003770 5.7e-39 164.1 117 70.1
Glyma.08G306600 Glycine max HOM05D003251 ORTHO05D003770 6.3e-38 160.6 117 69.2
Lj6g0022221 Lotus japonicus HOM05D003251 ORTHO05D003770 1.1e-34 149.8 117 65.8
arahy.Tifrunner.gnm1.ann1.FIF49B Arachis hypogaea HOM05D003251 ORTHO05D003770 5.5e-34 147.5 117 63.2
arahy.Tifrunner.gnm1.ann1.XDTP3U Arachis hypogaea HOM05D003251 ORTHO05D003770 9.3e-34 146.7 117 63.2
Ca_14585_v3 Cicer arietinum L. HOM05D003251 ORTHO05D003770 2.7e-33 145.2 117 62.4
Medtr3g450760 Medicago truncatula HOM05D003251 ORTHO05D003770 2.5e-31 138.7 115 59.1
TPR.G25285 Trifolium pratense HOM05D003251 ORTHO05D003770 1.3e-30 136.3 117 60.7
Lalb_Chr15g0081031 Lupinus albus HOM05D003251 ORTHO05D003770 7.7e-28 127.1 117 60.7
QL08p045144 Quercus lobata HOM05D003251 ORTHO05D003770 1.0e-27 126.7 110 60.9
Cfa023559 Carpinus fangiana HOM05D003251 ORTHO05D003770 8.5e-27 123.6 108 60.2
Psat5g198200 Pisum sativum HOM05D003251 ORTHO05D003770 1.1e-26 123.2 109 58.7
MD00G1163200 Malus domestica HOM05D003251 ORTHO05D003770 4.2e-26 121.3 108 59.3
MD17G1133500 Malus domestica HOM05D003251 ORTHO05D003770 5.5e-26 120.9 111 57.7
Manes.01G131000 Manihot esculenta HOM05D003251 ORTHO05D003770 7.2e-26 120.6 103 61.2
GSVIVG01020830001 Vitis vinifera HOM05D003251 ORTHO05D003770 1.2e-25 119.8 114 57.0
Potri.005G205700 Populus trichocarpa HOM05D003251 ORTHO05D003770 7.9e-25 117.1 108 59.3
Haze_13578 Corylus avellana HOM05D003251 ORTHO05D003770 1.0e-24 116.7 110 55.5
MD09G1146900 Malus domestica HOM05D003251 ORTHO05D003770 1.4e-24 116.3 111 56.8
Lalb_Chr04g0248951 Lupinus albus HOM05D003251 ORTHO05D003770 2.3e-24 115.5 117 54.7
Prupe.3G178400 Prunus persica HOM05D003251 ORTHO05D003770 6.7e-24 114.0 111 55.9
CANSAT64G1833 Cannabis sativa HOM05D003251 ORTHO05D003770 8.8e-24 113.6 115 53.0
CiPaw.03G190500 Carya illinoinensis HOM05D003251 ORTHO05D003770 1.1e-23 113.2 103 57.3
Potri.002G057000 Populus trichocarpa HOM05D003251 ORTHO05D003770 1.1e-23 113.2 108 57.4
arahy.Tifrunner.gnm1.ann1.1PUV9L Arachis hypogaea HOM05D003251 ORTHO05D003770 1.5e-23 112.8 117 52.1
arahy.Tifrunner.gnm1.ann1.QM6TI7 Arachis hypogaea HOM05D003251 ORTHO05D003770 1.5e-23 112.8 117 52.1
RcHm_v2.0_Chr2g0152321 Rosa chinensis HOM05D003251 ORTHO05D003770 1.5e-23 112.8 108 55.6
Sabra02G0046300 Salix brachista HOM05D003251 ORTHO05D003770 2.0e-23 112.5 108 56.5
FvH4_6g38770 Fragaria vesca HOM05D003251 ORTHO05D003770 2.5e-23 112.1 108 54.6
FAN14G2842 Fragaria x ananassa HOM05D003251 ORTHO05D003770 2.5e-23 112.1 108 54.6
FAN05G1089 Fragaria x ananassa HOM05D003251 ORTHO05D003770 3.3e-23 111.7 108 54.6
FAN09G3830 Fragaria x ananassa HOM05D003251 ORTHO05D003770 3.3e-23 111.7 108 54.6
FAN02G1383 Fragaria x ananassa HOM05D003251 ORTHO05D003770 1.7e-22 109.4 108 53.7
Dinv15661 Davidia involucrata HOM05D003251 ORTHO05D003770 3.7e-22 108.2 109 56.9
Atru.chr6.2025 Acer truncatum HOM05D003251 ORTHO05D003770 8.2e-22 107.1 108 52.8
Manes.02G089300 Manihot esculenta HOM05D003251 ORTHO05D003770 8.2e-22 107.1 107 53.3
TAR626G1483 Trochodendron aralioides HOM05D003251 ORTHO05D003770 1.4e-21 106.3 109 53.2
TWI14G0046 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 1.8e-21 105.9 112 52.7
Hma1.2p1_0734F.1_g210390 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 2.4e-21 105.5 118 51.7
Hma1.2p1_2465F.1_g322630 Hydrangea macrophylla HOM05D003251 ORTHO05D003770 2.4e-21 105.5 118 51.7
arahy.Tifrunner.gnm1.ann1.0D8J24 Arachis hypogaea HOM05D003251 ORTHO05D003770 3.1e-21 105.1 111 51.4
Eucgr.A02029 Eucalyptus grandis HOM05D003251 ORTHO05D003770 3.1e-21 105.1 111 52.3
CSS0030132 Camellia sinensis var. sinensis HOM05D003251 ORTHO05D003770 5.3e-21 104.4 117 50.4
Gohir.1Z049461 Gossypium hirsutum HOM05D003251 ORTHO05D003770 5.3e-21 104.4 108 52.8
Gohir.A07G182600 Gossypium hirsutum HOM05D003251 ORTHO05D003770 5.3e-21 104.4 108 52.8
Gohir.D07G189401 Gossypium hirsutum HOM05D003251 ORTHO05D003770 5.3e-21 104.4 108 52.8
Gorai.001G211000 Gossypium raimondii HOM05D003251 ORTHO05D003770 5.3e-21 104.4 108 52.8
Thecc.01G167800 Theobroma cacao HOM05D003251 ORTHO05D003770 6.9e-21 104.0 108 52.8
Ciclev10031282m.g Citrus clementina HOM05D003251 ORTHO05D003770 1.2e-20 103.2 112 50.0
Oeu056851.1 Olea europaea HOM05D003251 ORTHO05D003770 1.2e-20 103.2 113 54.0
Migut.M00075 Erythranthe guttata HOM05D003251 ORTHO05D003770 1.5e-20 102.8 112 52.7
Glyma.08G303400 Glycine max HOM05D003251 ORTHO05D003770 2.0e-20 102.4 85 58.8
TWI59G1422 Tripterygium wilfordii HOM05D003251 ORTHO05D003770 2.0e-20 102.4 104 54.8
Nn7g38011 Nelumbo nucifera HOM05D003251 ORTHO05D003770 2.6e-20 102.1 103 54.4
arahy.Tifrunner.gnm1.ann1.RBT75F Arachis hypogaea HOM05D003251 ORTHO05D003770 4.5e-20 101.3 107 49.5
COL.COLO4_04817 Corchorus olitorius HOM05D003251 ORTHO05D003770 4.5e-20 101.3 108 50.0
DCAR_013326 Daucus carota HOM05D003251 ORTHO05D003770 4.5e-20 101.3 101 54.5
Duzib138G1023 Durio zibethinus HOM05D003251 ORTHO05D003770 4.5e-20 101.3 103 53.4
Sabra05G0156300 Salix brachista HOM05D003251 ORTHO05D003770 4.5e-20 101.3 131 47.3
Lj8A97T49 Lonicera japonica HOM05D003251 ORTHO05D003770 1.3e-19 99.8 107 53.3
SGA_v2.0_scaffold73G24475 Striga asiatica HOM05D003251 ORTHO05D003770 3.8e-19 98.2 110 52.7
SalBow7G3844 Salvia bowleyana HOM05D003251 ORTHO05D003770 2.5e-18 95.5 114 50.0
AUR62015130 Chenopodium quinoa HOM05D003251 ORTHO05D003770 9.4e-18 93.6 108 49.1
Rhsim05G0166800 Rhododendron simsii HOM05D003251 ORTHO05D003770 1.2e-17 93.2 109 48.6
ClCG07G010750 Citrullus lanatus HOM05D003251 ORTHO05D003770 1.6e-17 92.8 107 49.5
Sed0023993 Sechium edule HOM05D003251 ORTHO05D003770 1.6e-17 92.8 107 49.5
MSTRG.14900 Avicennia marina HOM05D003251 ORTHO05D003770 2.1e-17 92.4 109 48.6
Sed0014508 Sechium edule HOM05D003251 ORTHO05D003770 2.1e-17 92.4 107 49.5
vmacro19571 Vaccinium macrocarpon HOM05D003251 ORTHO05D003770 2.1e-17 92.4 112 49.1
EL10Ac9g22841 Beta vulgaris HOM05D003251 ORTHO05D003770 2.7e-17 92.0 108 49.1
AUR62017590 Chenopodium quinoa HOM05D003251 ORTHO05D003770 2.7e-17 92.0 108 48.1
Cc08_g11770 Coffea canephora HOM05D003251 ORTHO05D003770 4.7e-17 91.3 109 49.5
THA.LOC104826243 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 4.7e-17 91.3 107 52.3
MSTRG.14102 Avicennia marina HOM05D003251 ORTHO05D003770 6.1e-17 90.9 108 47.2
Eucgr.K01238 Eucalyptus grandis HOM05D003251 ORTHO05D003770 6.1e-17 90.9 110 45.5
Aqoxy4G00020 Aquilegia oxysepala HOM05D003251 ORTHO05D003770 7.9e-17 90.5 115 47.0
Migut.H01275 Erythranthe guttata HOM05D003251 ORTHO05D003770 2.3e-16 89.0 117 47.9
Peaxi162Scf00359g00096 Petunia axillaris HOM05D003251 ORTHO05D003770 2.3e-16 89.0 99 50.5
CsaV3_4G007570 Cucumis sativus L. HOM05D003251 ORTHO05D003770 3.9e-16 88.2 107 48.6
PGR042G3279 Punica granatum HOM05D003251 ORTHO05D003770 5.1e-16 87.8 101 48.5
PSO675G1700 Papaver somniferum HOM05D003251 ORTHO05D003770 1.1e-15 86.7 114 41.2
LjContig00049g0008406 Lotus japonicus HOM05D003251 ORTHO05D003770 1.5e-15 86.3 85 50.6
Actinidia18852 Actinidia chinensis HOM05D003251 ORTHO05D003770 2.6e-15 85.5 119 45.4
Solyc07g045010.3 Solanum lycopersicum HOM05D003251 ORTHO05D003770 3.3e-15 85.1 101 45.5
THA.LOC104800816 Tarenaya hassleriana HOM05D003251 ORTHO05D003770 3.3e-15 85.1 110 49.1
Ah.01g001900 Amaranthus hybridus HOM05D003251 ORTHO05D003770 4.4e-15 84.7 103 47.6
MELO3C016184.2 Cucumis melo HOM05D003251 ORTHO05D003770 5.7e-15 84.3 105 48.6
Sopen07g023570 Solanum pennellii HOM05D003251 ORTHO05D003770 1.3e-14 83.2 96 45.8
A03p17210 Brassica napus HOM05D003251 ORTHO05D003770 1.7e-14 82.8 106 48.1
C08p02660 Brassica napus HOM05D003251 ORTHO05D003770 1.7e-14 82.8 107 45.8
BraA03t10994Z Brassica rapa HOM05D003251 ORTHO05D003770 1.7e-14 82.8 106 48.1
Carub.0004s1203 Capsella rubella HOM05D003251 ORTHO05D003770 1.7e-14 82.8 110 47.3
SGA_v2.0_scaffold181G39715 Striga asiatica HOM05D003251 ORTHO05D003770 1.7e-14 82.8 107 46.7
BolC8t47062H Brassica oleracea HOM05D003251 ORTHO05D003770 2.2e-14 82.4 107 44.9
Aa31LG6G9100 Aethionema arabicum HOM05D003251 ORTHO05D003770 2.8e-14 82.0 114 45.6
A08p35910 Brassica napus HOM05D003251 ORTHO05D003770 2.8e-14 82.0 107 44.9
PGSC0003DMG400028816 Solanum tuberosum HOM05D003251 ORTHO05D003770 3.7e-14 81.6 100 47.0
BcaC07g36797 Brassica carinata HOM05D003251 ORTHO05D003770 6.3e-14 80.9 107 44.9
BcaB01g04080 Brassica carinata HOM05D003251 ORTHO05D003770 8.2e-14 80.5 106 47.2
BolC3t14406H Brassica oleracea HOM05D003251 ORTHO05D003770 1.1e-13 80.1 106 47.2
SGA_v2.0_scaffold49G18391 Striga asiatica HOM05D003251 ORTHO05D003770 1.1e-13 80.1 98 45.9
BraA08t35498Z Brassica rapa HOM05D003251 ORTHO05D003770 1.4e-13 79.7 111 43.2
DCAR_023044 Daucus carota HOM05D003251 ORTHO05D003770 1.4e-13 79.7 103 42.7
Sc06g0009760 Simmondsia chinensis HOM05D003251 ORTHO05D003770 1.4e-13 79.7 113 44.2
BcaC01g06015 Brassica carinata HOM05D003251 ORTHO05D003770 1.8e-13 79.3 106 47.2
C03p20320 Brassica napus HOM05D003251 ORTHO05D003770 1.8e-13 79.3 106 47.2
Peaxi162Scf00047g00225 Petunia axillaris HOM05D003251 ORTHO05D003770 1.8e-13 79.3 99 45.5
Actinidia35167 Actinidia chinensis HOM05D003251 ORTHO05D003770 3.1e-13 78.6 102 45.1
Nitab4.5_0003208g0060 Nicotiana tabacum HOM05D003251 ORTHO05D003770 5.3e-13 77.8 99 45.5
Thhalv10007468m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 9.1e-13 77.0 111 44.1
HanXRQChr17g0541161 Helianthus annuus HOM05D003251 ORTHO05D003770 9.1e-13 77.0 95 45.3
CAN.G1500.6 Capsicum annuum HOM05D003251 ORTHO05D003770 1.2e-12 76.6 100 45.0
Sp1g05380 Schrenkiella parvula HOM05D003251 ORTHO05D003770 1.2e-12 76.6 110 41.8
PSO675G1711 Papaver somniferum HOM05D003251 ORTHO05D003770 1.6e-12 76.3 105 40.0
Hund08247 Selenicereus undatus HOM05D003251 ORTHO05D003770 1.6e-12 76.3 96 45.8
Sopen12g002220 Solanum pennellii HOM05D003251 ORTHO05D003770 1.6e-12 76.3 100 46.0
Sp4g13300 Schrenkiella parvula HOM05D003251 ORTHO05D003770 2.0e-12 75.9 106 45.3
CARHR124290 Cardamine hirsuta HOM05D003251 ORTHO05D003770 2.6e-12 75.5 110 43.6
Solyc12g006270.2 Solanum lycopersicum HOM05D003251 ORTHO05D003770 4.5e-12 74.7 100 45.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 5.9e-12 74.3 95 42.1
MBI01_g06560_MAGBIO Magnolia biondii HOM05D003251 ORTHO05D003770 7.7e-12 73.9 102 44.1
Lsat_1_v5_gn_3_35120 Lactuca sativa HOM05D003251 ORTHO05D003770 1.0e-11 73.6 105 41.9
Nitab4.5_0008720g0010 Nicotiana tabacum HOM05D003251 ORTHO05D003770 1.0e-11 73.6 75 46.7
AL4G25750 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 1.7e-11 72.8 110 42.7
AL1G16670 Arabidopsis lyrata HOM05D003251 ORTHO05D003770 2.9e-11 72.0 110 45.5
Nitab4.5_0001552g0070 Nicotiana tabacum HOM05D003251 ORTHO05D003770 3.8e-11 71.6 74 45.9
AT2G30820 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 5.0e-11 71.2 110 43.6
BcaB06g28387 Brassica carinata HOM05D003251 ORTHO05D003770 5.0e-11 71.2 106 43.4
CARHR006330 Cardamine hirsuta HOM05D003251 ORTHO05D003770 5.0e-11 71.2 107 43.9
Os03g0777100 Oryza sativa ssp. japonica HOM05D003251 ORTHO05D003770 6.5e-11 70.9 96 42.7
AT1G06660 Arabidopsis thaliana HOM05D003251 ORTHO05D003770 8.5e-11 70.5 110 44.5
CAN.G275.13 Capsicum annuum HOM05D003251 ORTHO05D003770 1.1e-10 70.1 87 47.1
Zm00001eb213700 Zea mays HOM05D003251 ORTHO05D003770 1.1e-10 70.1 94 44.7
Medtr5g090900 Medicago truncatula HOM05D003251 ORTHO05D003770 2.5e-10 68.9 82 45.1
A04p23500 Brassica napus HOM05D003251 ORTHO05D003770 4.2e-10 68.2 103 40.8
BraA04t17877Z Brassica rapa HOM05D003251 ORTHO05D003770 4.2e-10 68.2 103 40.8
Cpa.g.sc50.118 Carica papaya HOM05D003251 ORTHO05D003770 4.2e-10 68.2 72 50.0
C04p59920 Brassica napus HOM05D003251 ORTHO05D003770 9.4e-10 67.0 103 39.8
BolC4t27493H Brassica oleracea HOM05D003251 ORTHO05D003770 9.4e-10 67.0 103 39.8
Nitab4.5_0001229g0020 Nicotiana tabacum HOM05D003251 ORTHO05D003770 9.4e-10 67.0 74 45.9
C05p04850 Brassica napus HOM05D003251 ORTHO05D003770 1.6e-09 66.2 96 42.7
BolC5t29257H Brassica oleracea HOM05D003251 ORTHO05D003770 1.6e-09 66.2 96 42.7
COL.COLO4_37405 Corchorus olitorius HOM05D003251 ORTHO05D003770 1.6e-09 66.2 71 50.7
Thhalv10017740m.g Eutrema salsugineum HOM05D003251 ORTHO05D003770 1.6e-09 66.2 97 43.3
Carub.0001s0599 Capsella rubella HOM05D003251 ORTHO05D003770 2.1e-09 65.9 113 39.8
BcaB06g28449 Brassica carinata HOM05D003251 ORTHO05D003770 2.7e-09 65.5 103 40.8
BraA10t42791Z Brassica rapa HOM05D003251 ORTHO05D003770 6.1e-09 64.3 106 40.6
Glyma.02G283700 Glycine max HOM05D003251 ORTHO05D003770 6.1e-09 64.3 48 64.6
Glyma.14G030800 Glycine max HOM05D003251 ORTHO05D003770 1.4e-08 63.2 68 52.9
A10p05260 Brassica napus HOM05D003251 ORTHO05D003770 1.8e-08 62.8 106 39.6
Ca_06258_v3 Cicer arietinum L. HOM05D003251 ORTHO05D003770 3.0e-08 62.0 96 41.7
Aqoxy1G01562 Aquilegia oxysepala HOM05D003251 ORTHO05D003770 6.7e-08 60.8 86 40.7
Zm00001eb059360 Zea mays HOM05D003251 ORTHO05D003770 1.5e-07 59.7 98 41.8
ATR0763G034 Amborella trichopoda HOM05D003251 ORTHO05D003770 5.7e-07 57.8 97 41.2
BcaNung05938 Brassica carinata HOM05D003251 ORTHO05D003770 9.7e-07 57.0 103 37.9
ECA233G2088 Erigeron canadensis HOM05D003251 ORTHO05D003770 3.7e-06 55.1 73 38.4
TPR.G26007 Trifolium pratense HOM05D003251 ORTHO05D003770 4.8e-06 54.7 67 46.3
DCAR_009819 Daucus carota HOM05D003251 ORTHO05D003770 6.3e-06 54.3 75 44.0


User provided reference genes

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