Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 7.8e-120 433.7 205 100.0
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 1.1e-113 413.3 204 94.1
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 9.5e-110 400.2 204 91.2
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 7.8e-104 380.6 276 70.3
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 3.9e-103 378.3 204 85.8
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 1.5e-102 376.3 204 84.3
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 1.1e-100 370.2 204 82.4
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 4.0e-100 368.2 205 83.9
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 7.8e-96 354.0 226 74.3
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 5.1e-95 351.3 203 79.8
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 1.1e-94 350.1 233 71.7
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 2.7e-88 328.9 204 71.6
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 2.3e-87 325.9 204 71.6
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 5.1e-87 324.7 204 71.6
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 3.3e-86 322.0 204 70.1
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 7.3e-86 320.9 204 71.1
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 8.1e-85 317.4 204 70.6
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 1.8e-84 316.2 201 71.6
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 3.1e-84 315.5 209 69.9
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 4.0e-84 315.1 204 69.6
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 2.0e-83 312.8 205 70.2
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 3.4e-83 312.0 204 69.6
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 4.5e-83 311.6 204 68.1
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 9.9e-83 310.5 204 65.2
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 4.9e-82 308.1 200 68.5
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 8.4e-82 307.4 204 65.7
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.1e-81 307.0 204 67.2
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.1e-81 307.0 204 67.2
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 1.4e-81 306.6 204 67.2
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 3.2e-81 305.4 204 65.2
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 4.2e-81 305.1 200 67.5
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 4.2e-81 305.1 200 68.0
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 4.2e-81 305.1 203 68.0
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 5.4e-81 304.7 205 68.3
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 3.5e-80 302.0 204 65.7
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 4.6e-80 301.6 204 65.2
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 4.6e-80 301.6 204 65.2
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 2.3e-79 299.3 206 65.5
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 2.3e-79 299.3 204 65.2
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 1.5e-78 296.6 203 68.0
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 1.9e-78 296.2 201 66.7
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 2.5e-78 295.8 201 66.2
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 2.5e-78 295.8 201 64.2
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 3.3e-78 295.4 204 66.7
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 4.3e-78 295.0 204 65.7
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 5.6e-78 294.7 201 65.2
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 5.6e-78 294.7 204 66.2
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 5.6e-78 294.7 205 67.3
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 1.3e-77 293.5 201 64.7
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 1.3e-77 293.5 204 63.7
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 2.1e-77 292.7 205 62.4
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 3.6e-77 292.0 201 64.7
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 3.6e-77 292.0 201 64.7
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 1.1e-76 290.4 201 64.2
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 1.1e-76 290.4 202 64.4
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 1.1e-76 290.4 204 63.2
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 1.4e-76 290.0 201 64.2
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 2.4e-76 289.3 205 66.8
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 2.4e-76 289.3 203 64.0
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 3.1e-76 288.9 201 63.7
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 5.3e-76 288.1 201 64.2
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 1.2e-75 287.0 196 67.9
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 2.0e-75 286.2 201 63.7
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 2.0e-75 286.2 201 64.2
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 2.0e-75 286.2 201 63.7
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 2.0e-75 286.2 205 64.9
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 2.6e-75 285.8 209 62.7
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 3.4e-75 285.4 201 64.2
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 9.9e-75 283.9 203 64.0
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 9.9e-75 283.9 204 62.3
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 9.9e-75 283.9 206 62.1
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 9.9e-75 283.9 207 64.3
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 1.3e-74 283.5 203 62.6
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 2.4e-73 279.3 198 64.6
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 3.0e-71 272.3 205 60.0
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 3.3e-70 268.9 202 65.8
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 2.1e-69 266.2 300 47.0
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 5.3e-68 261.5 205 59.0
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 1.0e-66 257.3 204 57.4
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 1.0e-66 257.3 205 59.5
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 2.9e-66 255.8 201 57.7
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 7.9e-64 247.7 170 64.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 3.9e-63 245.4 245 52.7
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 3.9e-63 245.4 157 68.2
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 1.6e-61 240.0 181 61.3
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 3.1e-60 235.7 203 53.2
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 3.4e-59 232.3 175 60.6
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 1.0e-58 230.7 205 57.1
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 1.3e-50 203.8 203 44.3
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 1.7e-50 203.4 425 32.0
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 8.5e-50 201.1 192 52.1
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 9.4e-49 197.6 137 67.9
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 1.1e-46 190.7 163 49.1
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 5.9e-43 178.3 110 68.2
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 2.9e-42 176.0 202 43.6
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 1.0e-39 167.5 110 70.9
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 2.6e-38 162.9 179 41.3
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.3e-38 162.5 144 54.9
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 3.6e-32 142.5 102 61.8
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 1.2e-30 137.5 120 54.2
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 4.8e-29 132.1 190 40.5
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 7.0e-28 128.3 86 72.1
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 1.2e-24 117.5 179 40.8
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 2.7e-24 116.3 95 55.8
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 2.8e-21 106.3 70 64.3
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 1.5e-17 94.0 67 65.7
Phvul.009G102700 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 5.5e-17 92.0 92 56.5
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 1.6e-16 90.5 68 54.4
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 1.1e-09 67.8 71 39.4
Phvul.009G103000 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 2.3e-07 60.1 27 88.9
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 1.2e-06 57.8 46 50.0


User provided reference genes

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