Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 9.1e-87 323.9 216 100.0
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 7.5e-81 304.3 216 88.4
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 9.5e-68 260.8 216 84.7
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 2.1e-67 259.6 216 79.2
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 1.1e-50 204.1 223 65.0
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 2.6e-49 199.5 216 66.2
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 1.3e-48 197.2 218 71.6
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 1.1e-47 194.1 221 71.9
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 2.4e-47 193.0 222 65.8
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 1.2e-46 190.7 218 63.3
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 1.2e-46 190.7 227 69.6
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 4.6e-46 188.7 226 64.2
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 2.3e-45 186.4 220 64.5
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 3.0e-45 186.0 228 64.9
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 5.1e-45 185.3 222 68.5
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 6.6e-45 184.9 219 63.9
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 8.6e-45 184.5 223 63.7
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 1.1e-44 184.1 216 63.9
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 1.1e-44 184.1 217 71.9
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 1.9e-44 183.3 222 62.2
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 1.9e-44 183.3 220 63.6
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 2.5e-44 183.0 224 64.3
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 3.3e-44 182.6 222 67.1
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 3.3e-44 182.6 222 66.7
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 9.6e-44 181.0 218 65.1
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 1.6e-43 180.3 215 64.2
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 2.8e-43 179.5 220 69.5
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 8.1e-43 177.9 224 59.4
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 1.4e-42 177.2 218 67.9
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 1.8e-42 176.8 218 64.7
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 3.1e-42 176.0 224 63.4
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 3.1e-42 176.0 220 65.9
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 6.9e-42 174.9 220 67.7
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 8.9e-42 174.5 222 62.6
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 8.9e-42 174.5 154 78.6
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 1.2e-41 174.1 215 66.5
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 1.5e-41 173.7 222 64.4
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 1.5e-41 173.7 223 63.2
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 2.0e-41 173.3 225 60.9
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 2.0e-41 173.3 225 60.9
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 2.0e-41 173.3 225 60.9
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 4.4e-41 172.2 223 60.1
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 5.8e-41 171.8 221 62.4
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 9.9e-41 171.0 220 62.7
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 9.9e-41 171.0 214 62.1
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 9.9e-41 171.0 223 60.1
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 9.9e-41 171.0 216 61.6
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 2.9e-40 169.5 223 64.1
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 3.8e-40 169.1 225 60.4
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 4.9e-40 168.7 221 66.5
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 8.4e-40 167.9 221 57.9
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 8.4e-40 167.9 223 62.3
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 2.4e-39 166.4 222 59.5
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 2.4e-39 166.4 225 56.9
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 3.2e-39 166.0 226 54.4
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 4.2e-39 165.6 167 75.4
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 7.1e-39 164.9 221 62.0
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 7.1e-39 164.9 215 63.3
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 1.2e-38 164.1 224 60.3
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 1.6e-38 163.7 221 59.3
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 1.6e-38 163.7 221 59.3
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 2.1e-38 163.3 224 60.3
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 3.5e-38 162.5 219 66.7
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 7.8e-38 161.4 220 63.2
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.3e-37 159.8 165 60.0
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 2.3e-37 159.8 220 62.3
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 5.1e-37 158.7 144 64.6
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 1.5e-36 157.1 221 57.9
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 1.5e-36 157.1 221 59.3
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 1.5e-36 157.1 215 67.0
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 3.3e-36 156.0 155 72.9
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 9.6e-36 154.5 217 64.1
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 3.6e-35 152.5 223 59.2
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 6.2e-35 151.8 222 62.6
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 1.4e-34 150.6 214 61.2
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 1.8e-34 150.2 221 59.7
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 3.1e-34 149.4 168 54.2
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 5.3e-34 148.7 221 58.8
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 6.9e-34 148.3 227 55.9
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 1.5e-33 147.1 218 61.5
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 2.0e-33 146.7 142 82.4
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 2.6e-33 146.4 217 54.4
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 3.4e-33 146.0 217 56.2
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 4.5e-33 145.6 219 47.0
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 5.8e-33 145.2 173 52.0
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 3.8e-32 142.5 159 74.8
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 7.4e-28 128.3 128 69.5
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 3.6e-27 125.9 221 57.5
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 3.1e-26 122.9 160 69.4
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 9.0e-26 121.3 154 62.3
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 4.5e-25 119.0 152 69.7
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 5.8e-25 118.6 218 54.1
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 4.9e-24 115.5 152 69.1
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.4e-23 114.0 126 73.0
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 2.7e-22 109.8 85 68.2
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 3.0e-21 106.3 106 74.5
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 1.5e-20 104.0 74 77.0
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 4.8e-19 99.0 169 34.9
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 1.4e-18 97.4 106 75.5
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 4.0e-18 95.9 100 53.0
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 5.3e-18 95.5 106 74.5
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 6.9e-18 95.1 94 56.4
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 6.9e-18 95.1 100 53.0
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 9.0e-18 94.7 101 51.5
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 1.9e-15 87.0 146 43.8
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 2.5e-15 86.7 147 53.1
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 3.2e-15 86.3 107 72.0
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 1.6e-14 84.0 84 52.4
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 5.7e-12 75.5 60 66.7
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 4.1e-10 69.3 115 42.6
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 1.7e-08 63.9 84 50.0


User provided reference genes

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