Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 5.5e-113 411.0 210 100.0
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 4.4e-110 401.4 210 97.1
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 8.3e-109 397.1 210 96.2
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 3.1e-108 395.2 210 96.2
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 3.7e-101 371.7 210 88.6
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 2.4e-100 369.0 207 88.9
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.2e-99 366.7 211 88.6
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 3.5e-99 365.2 211 88.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 3.7e-93 345.1 206 85.9
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 8.3e-93 344.0 210 84.8
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 9.2e-92 340.5 205 86.8
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 8.9e-87 323.9 186 86.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.2e-86 323.6 207 79.2
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 4.4e-86 321.6 206 82.5
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.7e-85 319.7 205 76.6
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 2.2e-85 319.3 204 80.9
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.9e-85 318.9 205 80.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 4.1e-84 315.1 203 79.8
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 5.4e-84 314.7 203 80.8
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 7.0e-84 314.3 213 77.5
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 9.2e-84 313.9 203 79.3
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.6e-83 313.2 208 79.8
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.6e-83 313.2 203 77.8
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.7e-83 312.4 208 79.3
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.3e-82 310.1 203 78.3
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.7e-82 309.7 208 74.5
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 1.7e-82 309.7 204 75.0
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.7e-82 309.7 203 79.3
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.3e-82 309.3 210 75.7
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.0e-82 308.9 206 76.2
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.0e-82 308.1 187 82.9
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 8.6e-82 307.4 192 81.8
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.1e-81 307.0 203 75.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.9e-81 306.2 206 76.7
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 3.3e-81 305.4 200 78.5
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 3.3e-81 305.4 204 76.0
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.3e-81 305.4 209 76.6
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.3e-81 305.4 200 78.5
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 5.6e-81 304.7 178 84.3
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.3e-81 304.3 187 81.8
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-80 303.1 206 75.7
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.8e-80 302.4 207 75.4
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.8e-80 302.4 207 75.4
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.6e-80 302.0 210 75.7
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.6e-80 302.0 202 74.8
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.7e-80 301.6 209 73.7
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 4.7e-80 301.6 206 76.2
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 6.2e-80 301.2 204 76.5
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.1e-79 300.4 207 75.4
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.4e-79 300.1 187 79.1
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.0e-79 298.5 209 73.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 3.4e-78 295.4 206 73.8
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.4e-78 295.0 199 74.9
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.4e-78 295.0 210 73.3
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.7e-77 293.1 182 80.2
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.7e-77 293.1 206 75.2
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 2.2e-77 292.7 204 75.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 2.2e-77 292.7 203 74.4
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 1.1e-76 290.4 186 78.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 3.2e-76 288.9 206 71.4
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 3.2e-76 288.9 197 73.1
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 7.1e-76 287.7 207 72.5
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 7.1e-76 287.7 207 72.0
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 9.2e-76 287.3 207 72.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.6e-75 286.6 202 73.3
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.6e-75 286.6 207 72.5
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.1e-75 286.2 207 72.9
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 6.0e-75 284.6 203 71.4
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 6.0e-75 284.6 210 69.5
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.3e-74 283.5 219 70.8
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.6e-74 280.8 204 69.1
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 8.6e-74 280.8 286 54.9
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 1.1e-73 280.4 218 70.2
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.1e-73 280.4 201 72.6
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.5e-73 280.0 201 72.6
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 2.5e-73 279.3 209 71.8
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 3.3e-73 278.9 204 71.1
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.3e-73 278.9 204 71.1
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-73 278.9 215 72.1
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 4.3e-73 278.5 201 71.6
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.5e-73 277.3 161 82.6
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 9.5e-73 277.3 203 70.4
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.2e-72 276.9 206 69.4
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.2e-72 276.9 204 68.1
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.1e-72 276.2 200 70.0
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 3.6e-72 275.4 206 70.9
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.1e-71 273.9 205 68.8
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 1.1e-71 273.9 157 84.7
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.4e-71 273.5 170 78.8
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.8e-71 273.1 189 72.0
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.0e-71 271.9 198 69.2
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 8.9e-71 270.8 209 68.4
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 2.0e-70 269.6 209 67.9
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 2.0e-70 269.6 204 67.2
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.0e-70 269.6 202 66.8
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.6e-70 269.2 201 66.7
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.8e-70 268.1 201 70.1
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 7.5e-70 267.7 208 65.4
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 9.9e-70 267.3 197 68.0
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.3e-69 266.9 204 67.6
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 1.7e-69 266.5 201 66.2
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.2e-69 266.2 201 66.7
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 2.9e-69 265.8 182 73.6
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 4.9e-69 265.0 205 69.3
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 4.9e-69 265.0 202 66.8
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.1e-68 261.9 174 73.0
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 4.1e-68 261.9 203 66.5
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 5.4e-68 261.5 198 68.2
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 2.7e-67 259.2 174 71.3
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 2.7e-67 259.2 193 71.5
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.5e-67 258.8 159 82.4
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 6.0e-67 258.1 199 68.3
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.7e-66 256.5 207 70.5
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 6.6e-66 254.6 203 64.5
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.5e-65 253.4 202 68.8
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.5e-65 252.7 202 63.4
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.5e-65 252.7 204 67.6
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 5.6e-65 251.5 193 68.4
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 9.6e-65 250.8 197 66.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.2e-64 248.1 165 75.8
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.4e-60 236.9 172 70.9
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 3.2e-60 235.7 206 63.1
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.4e-55 220.3 128 84.4
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.8e-55 219.9 195 57.9
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 9.0e-55 217.6 162 69.1
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 4.4e-54 215.3 169 66.3
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.1e-52 208.0 127 79.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.3e-49 199.1 156 67.3
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 6.2e-48 194.9 170 57.1
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.5e-46 190.3 150 60.7
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 4.5e-46 188.7 199 50.3
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 9.9e-46 187.6 123 78.0
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 6.4e-45 184.9 96 90.6
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.2e-44 182.6 194 54.1
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 9.3e-44 181.0 122 73.8
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 3.0e-42 176.0 110 81.8
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 3.9e-42 175.6 103 81.6
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 6.7e-42 174.9 107 81.3
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 3.4e-38 162.5 149 53.0
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 4.5e-38 162.2 185 47.0
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 6.5e-37 158.3 163 54.0
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 7.9e-35 151.4 173 51.4
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 5.8e-30 135.2 102 69.6
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 3.6e-19 99.4 108 53.7
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.3e-18 96.7 72 62.5
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.3e-18 96.7 159 36.5
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 5.1e-18 95.5 59 72.9
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 8.8e-18 94.7 72 61.1
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.7e-17 92.0 218 37.6
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 7.4e-17 91.7 55 76.4
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 5.3e-15 85.5 174 33.9
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 5.0e-13 79.0 47 85.1
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 4.2e-12 75.9 84 50.0
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 6.1e-11 72.0 56 66.1
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.2e-08 63.5 40 75.0
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 1.8e-07 60.5 53 56.6


User provided reference genes

Program Settings