Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 4.2e-229 797.7 417 100.0
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 6.1e-196 687.6 437 85.4
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 5.1e-187 657.9 435 82.3
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 3.5e-159 565.5 428 76.2
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 2.3e-158 562.8 377 79.8
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 3.6e-156 555.4 440 74.3
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 2.0e-146 523.1 446 69.1
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.9e-144 516.5 453 68.0
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 4.7e-140 501.9 509 61.9
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 6.2e-140 501.5 433 69.5
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 1.2e-132 477.2 372 72.0
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 7.1e-128 461.5 315 79.4
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 5.2e-123 445.3 453 58.7
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.5e-122 443.7 458 59.4
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 9.9e-122 441.0 446 59.9
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 3.2e-120 436.0 450 57.6
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 1.3e-116 424.1 457 58.4
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 3.6e-116 422.5 449 56.8
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 3.6e-116 422.5 455 58.2
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 2.4e-115 419.9 449 58.8
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 6.9e-115 418.3 447 57.0
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 9.0e-115 417.9 431 58.2
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 4.5e-114 415.6 448 57.6
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 4.9e-113 412.1 450 57.3
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 9.3e-112 407.9 329 67.8
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 2.7e-111 406.4 441 56.7
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.3e-110 403.3 312 72.1
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 9.6e-109 397.9 439 56.9
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 9.6e-109 397.9 441 56.9
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 9.6e-109 397.9 440 54.5
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 9.6e-109 397.9 424 57.3
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.6e-108 397.1 426 55.4
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 4.5e-106 389.0 435 55.6
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 2.9e-105 386.3 475 51.4
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 1.1e-104 384.4 442 55.0
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 6.0e-103 378.6 426 55.9
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 8.7e-102 374.8 431 55.2
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 3.3e-101 372.9 432 55.3
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 3.3e-101 372.9 374 60.2
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 4.3e-101 372.5 375 58.7
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 4.8e-100 369.0 443 51.2
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 6.2e-100 368.6 464 49.6
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.8e-99 367.1 447 52.8
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.4e-99 366.7 434 55.1
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 4.0e-99 365.9 441 54.9
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 4.0e-99 365.9 472 50.8
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.5e-98 364.0 422 54.3
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 2.6e-98 363.2 428 52.8
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 1.3e-97 360.9 435 51.0
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.9e-97 359.8 424 56.4
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 9.3e-96 354.8 457 50.5
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 3.5e-95 352.8 459 49.5
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 5.1e-94 349.0 464 49.8
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 6.7e-94 348.6 431 52.2
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 6.7e-94 348.6 459 49.2
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 1.9e-93 347.1 434 51.8
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 3.3e-93 346.3 459 49.2
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 2.8e-92 343.2 435 51.5
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 2.8e-92 343.2 450 51.6
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 3.7e-92 342.8 425 53.9
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 1.2e-90 337.8 473 48.6
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 2.6e-90 336.7 285 67.0
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.4e-90 336.3 442 50.5
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 7.6e-90 335.1 474 47.3
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.3e-89 334.3 438 49.8
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 2.9e-89 333.2 415 53.0
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.1e-88 331.3 487 46.4
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.4e-88 330.9 454 49.8
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.1e-87 327.0 440 50.9
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 7.9e-87 325.1 440 50.2
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.0e-86 324.7 336 56.5
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 3.0e-86 323.2 443 47.6
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.7e-86 321.6 434 50.9
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.5e-85 320.9 350 54.0
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 5.7e-85 318.9 285 63.5
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 9.7e-85 318.2 445 47.0
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.2e-84 317.0 439 48.7
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 2.8e-84 316.6 476 47.9
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.4e-83 313.5 424 48.6
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 4.1e-83 312.8 189 86.8
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 9.1e-83 311.6 331 55.9
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.2e-82 311.2 479 44.7
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 1.3e-81 307.8 414 49.5
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 2.2e-81 307.0 365 52.1
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 2.2e-81 307.0 342 53.8
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.9e-81 306.6 342 52.0
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.9e-81 306.6 331 54.1
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.9e-81 306.6 341 54.0
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 3.2e-80 303.1 361 50.4
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 1.4e-78 297.7 290 61.4
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.7e-76 290.8 599 37.6
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 6.3e-76 288.9 330 55.2
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 6.3e-76 288.9 345 50.7
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 2.4e-75 287.0 224 68.3
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 4.1e-75 286.2 420 46.0
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 6.5e-73 278.9 221 69.7
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 8.5e-73 278.5 261 62.8
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 8.5e-73 278.5 295 56.6
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.1e-72 278.1 461 43.4
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 3.2e-72 276.6 249 61.8
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 9.4e-72 275.0 306 54.9
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 4.7e-71 272.7 417 45.1
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 6.1e-71 272.3 260 61.9
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 7.9e-71 271.9 307 54.1
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 1.0e-70 271.6 453 41.9
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 1.8e-70 270.8 270 57.8
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 6.3e-68 262.3 262 58.0
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 5.9e-66 255.8 343 48.4
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 2.9e-65 253.4 417 43.4
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 4.2e-64 249.6 418 44.0
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 4.2e-64 249.6 418 44.0
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 1.4e-62 244.6 423 42.6
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 2.2e-60 237.3 434 42.2
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 2.8e-60 236.9 417 41.5
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.5e-58 229.6 311 48.9
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 7.5e-53 212.2 254 49.2
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 3.1e-51 206.8 217 52.1
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.6e-50 204.5 310 43.2
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 2.0e-50 204.1 422 39.6
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 6.5e-49 199.1 272 50.0
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.2e-45 188.3 398 38.7
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 9.8e-45 185.3 189 58.2
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 3.8e-41 173.3 182 57.1
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 2.5e-40 170.6 422 33.6
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 4.3e-40 169.9 457 34.1
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 4.7e-39 166.4 468 33.8
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 4.7e-39 166.4 135 68.1
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 6.8e-38 162.5 184 52.7
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 6.8e-38 162.5 152 63.2
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 2.4e-35 154.1 139 61.2
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.0e-33 148.7 320 35.6
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 5.6e-32 142.9 212 44.8
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 9.5e-32 142.1 93 78.5
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 1.4e-30 138.3 158 50.0
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 1.5e-29 134.8 207 43.0
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.2e-27 127.1 230 40.9
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-26 125.2 69 82.6
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.2e-26 125.2 71 80.3
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.5e-26 123.6 191 46.6
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.6e-26 123.2 71 78.9
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.3e-25 120.9 70 82.9
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 7.3e-24 115.9 82 80.5
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 9.5e-24 115.5 115 53.9
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 2.3e-22 110.9 105 58.1
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 4.0e-22 110.2 245 38.0
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 8.9e-22 109.0 115 52.2
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 2.0e-21 107.8 228 35.5
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.6e-21 107.5 257 36.6
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.4e-19 101.7 263 35.0
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.6e-18 98.2 231 35.9
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.1e-18 97.8 88 54.5
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.5e-16 91.7 231 34.2
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.9e-16 91.3 231 34.2
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.9e-16 91.3 231 34.2
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 3.3e-16 90.5 127 50.4
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.6e-15 88.2 250 32.0
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.4e-14 85.1 90 53.3
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 1.5e-13 81.6 145 42.8
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 1.4e-11 75.1 99 37.4
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.4e-11 75.1 168 29.8
SHI28534 Sapria himalayana HOM05D005377 ORTHO05D003034 3.3e-08 63.9 162 35.8
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 9.6e-08 62.4 62 61.3
Nn1g05398 Nelumbo nucifera HOM05D067915 ORTHO05D049297 1.2e-07 62.0 136 36.0


User provided reference genes

Program Settings