Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 4.0e-202 708.0 385 100.0
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 2.7e-166 589.0 377 85.7
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 6.9e-154 547.7 398 77.9
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 4.2e-151 538.5 395 80.0
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.2e-129 467.2 408 69.4
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 1.0e-120 437.6 397 64.7
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 1.1e-114 417.5 378 66.4
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 5.2e-101 372.1 388 61.9
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 6.2e-94 348.6 372 57.3
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 2.7e-89 333.2 389 60.4
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 3.5e-89 332.8 401 53.6
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 4.3e-87 325.9 405 55.3
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 2.8e-86 323.2 405 50.6
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 4.7e-86 322.4 411 54.7
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 1.4e-85 320.9 410 56.3
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 2.9e-83 313.2 407 52.8
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 8.4e-83 311.6 409 51.3
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 1.1e-82 311.2 404 51.2
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 5.4e-82 308.9 419 52.3
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 9.2e-82 308.1 408 52.7
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 9.2e-82 308.1 415 50.8
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.6e-81 307.4 414 51.4
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 3.5e-81 306.2 415 52.0
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 2.3e-80 303.5 387 55.8
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 3.9e-80 302.8 409 51.6
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 5.1e-80 302.4 425 54.4
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.1e-79 301.2 415 50.1
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 2.5e-79 300.1 422 48.8
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 1.2e-78 297.7 445 52.8
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 6.9e-77 292.0 371 52.3
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 6.9e-77 292.0 420 53.8
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 9.9e-76 288.1 429 48.7
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 7.1e-74 282.0 425 52.7
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.8e-73 278.5 425 52.7
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 1.0e-72 278.1 379 50.4
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 1.0e-72 278.1 394 51.0
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.3e-72 277.7 425 52.0
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.0e-72 276.6 424 51.4
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 4.8e-70 269.2 402 45.8
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.4e-69 267.7 417 45.8
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 7.6e-68 261.9 408 46.3
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.7e-67 260.8 388 44.8
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 8.4e-67 258.5 417 48.0
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 3.0e-64 250.0 412 45.1
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 8.7e-64 248.4 358 52.8
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.5e-63 247.7 411 45.7
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 3.3e-63 246.5 412 44.7
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 3.3e-63 246.5 414 44.4
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 6.2e-62 242.3 417 48.7
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.4e-61 241.1 380 43.9
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 5.3e-61 239.2 408 45.1
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.9e-61 238.8 411 44.3
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 1.5e-60 237.7 309 49.8
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 2.6e-60 236.9 381 47.0
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 2.6e-60 236.9 399 43.6
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 3.5e-57 226.5 460 42.2
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 3.9e-56 223.0 406 46.6
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 8.7e-56 221.9 452 44.5
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 8.7e-56 221.9 332 42.5
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 5.6e-55 219.2 373 42.4
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 9.6e-55 218.4 407 43.7
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 1.6e-54 217.6 400 41.5
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 2.1e-54 217.2 331 44.1
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 6.2e-54 215.7 385 40.3
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.8e-53 214.2 290 50.7
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 2.2e-51 207.2 425 38.1
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 3.5e-49 199.9 402 41.8
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 2.3e-48 197.2 414 39.1
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 1.3e-46 191.4 393 41.0
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 3.7e-46 189.9 404 36.9
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 4.8e-46 189.5 400 40.2
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 4.8e-46 189.5 404 40.6
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 1.1e-45 188.3 457 40.0
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 2.4e-45 187.2 367 42.5
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 2.6e-44 183.7 327 48.9
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 1.7e-43 181.0 301 46.8
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 2.2e-43 180.6 415 36.4
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 2.2e-43 180.6 307 43.3
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 1.0e-40 171.8 377 38.2
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 6.7e-40 169.1 399 35.6
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 5.7e-39 166.0 388 40.5
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 1.7e-38 164.5 381 39.4
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 6.3e-38 162.5 375 40.8
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.0e-36 157.5 371 36.7
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 7.7e-36 155.6 409 41.6
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 1.3e-35 154.8 336 37.8
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 1.7e-35 154.5 389 39.8
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 2.2e-35 154.1 105 70.5
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 5.0e-35 152.9 372 33.3
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 6.5e-35 152.5 282 36.5
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.4e-34 151.4 357 32.8
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 1.9e-34 151.0 383 36.6
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 4.2e-34 149.8 444 34.0
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 5.5e-34 149.4 435 29.7
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 4.7e-33 146.4 405 32.6
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 6.1e-33 146.0 393 33.8
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 6.1e-33 146.0 203 43.8
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.1e-32 142.9 167 49.7
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 2.4e-29 134.0 407 35.9
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.2e-26 123.2 268 37.7
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 1.8e-24 117.9 390 31.5
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 3.3e-23 113.6 136 44.9
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.7e-22 111.3 121 62.0
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 1.7e-22 111.3 311 31.2
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 6.3e-22 109.4 110 51.8
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 8.2e-22 109.0 329 35.0
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 8.2e-22 109.0 336 34.5
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 3.5e-20 103.6 316 37.3
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 3.8e-19 100.1 117 53.8
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 1.1e-18 98.6 394 30.2
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.1e-18 98.6 167 41.3
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 1.5e-18 98.2 324 33.6
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 2.5e-18 97.4 323 33.4
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 2.5e-18 97.4 323 33.4
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 4.2e-18 96.7 153 45.8
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 5.5e-18 96.3 326 34.0
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 2.7e-17 94.0 349 33.2
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 3.6e-17 93.6 329 34.3
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 6.1e-17 92.8 330 35.5
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 6.1e-17 92.8 327 30.3
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 6.1e-17 92.8 330 33.0
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 6.1e-17 92.8 401 27.9
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.4e-16 91.7 329 34.3
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.4e-16 91.7 329 34.3
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 1.4e-16 91.7 323 34.4
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 3.0e-16 90.5 330 32.7
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 4.0e-16 90.1 176 40.3
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 6.7e-16 89.4 392 34.2
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 1.2e-15 88.6 323 29.7
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 5.7e-15 86.3 218 34.9
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 9.7e-15 85.5 111 50.5
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.7e-14 84.7 305 28.9
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 8.2e-14 82.4 321 33.0
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 8.2e-14 82.4 321 33.0
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 8.2e-14 82.4 222 36.9
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 1.1e-13 82.0 152 38.8
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 4.1e-13 80.1 321 32.7
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 4.1e-13 80.1 50 84.0
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 3.5e-12 77.0 348 30.5
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 1.0e-11 75.5 392 26.3
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 1.7e-11 74.7 346 29.2
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 9.4e-10 68.9 150 40.7
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 6.1e-09 66.2 304 28.0
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 1.4e-08 65.1 322 27.6
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 3.4e-07 60.5 154 35.7
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 1.7e-06 58.2 290 22.8


User provided reference genes

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