Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 2.5e-270 934.9 471 100.0
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 1.4e-249 865.9 471 92.8
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 3.5e-240 834.7 471 89.2
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 1.7e-239 832.4 471 89.0
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 2.7e-224 781.9 470 84.0
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.7e-218 762.7 471 81.1
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 8.3e-218 760.4 471 81.7
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 7.3e-214 747.3 461 81.6
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 4.7e-213 744.6 472 79.7
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 1.2e-211 740.0 472 79.4
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 3.3e-206 721.8 471 79.2
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 1.4e-201 706.4 471 77.5
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 3.1e-188 662.1 472 69.7
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 3.8e-186 655.2 474 69.8
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 4.2e-185 651.7 472 69.7
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 1.6e-184 649.8 472 69.7
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 4.6e-184 648.3 472 69.1
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 1.9e-182 642.9 473 67.9
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.5e-182 642.5 471 68.6
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 4.3e-182 641.7 488 67.0
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 5.6e-182 641.3 474 68.6
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 3.7e-181 638.6 473 67.4
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 3.7e-181 638.6 473 68.7
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 3.7e-181 638.6 473 67.7
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 3.1e-180 635.6 471 66.7
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 5.3e-180 634.8 471 67.7
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.1e-176 622.9 473 66.4
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.1e-176 622.9 474 67.1
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 6.7e-175 617.8 472 65.9
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.5e-174 615.9 521 61.4
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 5.6e-174 614.8 476 65.5
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 5.6e-174 614.8 510 62.4
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 1.6e-173 613.2 483 64.8
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-172 610.5 476 65.5
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 5.3e-172 608.2 523 61.0
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 3.5e-168 595.5 447 68.2
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.3e-166 589.0 475 62.9
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 4.8e-165 585.1 451 67.0
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 4.1e-164 582.0 492 61.8
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 2.6e-163 579.3 484 61.6
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.9e-161 573.2 482 59.8
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 1.9e-161 573.2 471 63.7
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 5.5e-161 571.6 432 67.4
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 2.1e-160 569.7 473 61.5
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 6.1e-160 568.2 466 62.4
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 6.1e-160 568.2 484 59.5
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 1.4e-159 567.0 454 63.7
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.4e-159 567.0 476 61.6
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 8.8e-159 564.3 471 62.2
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 5.7e-158 561.6 482 58.7
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 1.4e-156 557.0 519 57.6
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 3.1e-156 555.8 475 60.6
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 3.1e-156 555.8 481 58.4
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 7.7e-155 551.2 476 60.3
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 1.1e-153 547.4 510 57.6
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 2.1e-152 543.1 474 60.3
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 3.0e-151 539.3 518 57.3
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.5e-150 537.0 447 61.7
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.0e-150 536.6 472 59.1
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.3e-150 535.8 472 58.9
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.4e-148 530.4 472 57.4
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 2.4e-148 529.6 472 59.5
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 2.4e-148 529.6 454 60.8
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 6.1e-144 515.0 413 63.9
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 6.1e-144 515.0 477 55.1
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 3.9e-143 512.3 441 60.1
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 5.2e-143 511.9 462 57.1
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.1e-140 501.1 463 57.2
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.2e-139 500.7 471 57.1
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 3.5e-139 499.2 478 53.3
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.7e-138 496.9 432 61.3
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 8.5e-138 494.6 473 55.4
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 7.2e-137 491.5 472 55.5
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 2.1e-136 490.0 473 54.3
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 4.0e-135 485.7 470 54.3
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 5.2e-135 485.3 419 62.1
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.7e-133 480.3 490 53.5
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 2.8e-133 479.6 472 55.5
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 3.7e-133 479.2 428 58.2
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 6.3e-133 478.4 484 53.1
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 6.3e-133 478.4 484 53.1
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 7.7e-131 471.5 403 60.5
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 1.0e-130 471.1 495 52.1
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 3.8e-130 469.2 494 52.8
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 8.5e-130 468.0 434 57.6
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 4.2e-129 465.7 494 52.6
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 4.2e-129 465.7 494 52.6
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 2.7e-128 463.0 471 54.8
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 1.8e-127 460.3 494 52.4
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 2.8e-125 453.0 345 67.0
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 1.0e-122 444.5 447 54.4
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 6.6e-122 441.8 522 48.3
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.2e-120 437.6 464 50.0
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 3.4e-118 429.5 472 49.6
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 2.7e-115 419.9 479 49.7
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 1.7e-114 417.2 381 57.5
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 2.9e-114 416.4 428 50.9
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 9.8e-110 401.4 474 48.9
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 9.8e-110 401.4 514 46.1
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 8.3e-109 398.3 494 47.0
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 4.1e-108 396.0 224 88.4
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 7.0e-108 395.2 414 54.3
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 5.6e-105 385.6 413 52.1
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.1e-103 381.3 436 48.6
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 6.4e-101 372.1 428 46.5
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.9e-100 370.5 472 41.5
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 9.2e-100 368.2 482 42.9
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 3.5e-99 366.3 483 45.5
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 3.5e-99 366.3 346 56.4
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 1.3e-98 364.4 346 56.9
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 6.6e-98 362.1 437 48.5
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 8.1e-96 355.1 488 43.2
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.1e-95 353.2 265 69.8
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 2.6e-94 350.1 448 47.1
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 4.3e-89 332.8 396 49.0
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 1.1e-87 328.2 459 45.8
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 2.9e-85 320.1 532 37.6
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 4.6e-83 312.8 492 39.2
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 9.6e-81 305.1 276 53.6
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.4e-76 290.4 277 52.7
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 5.4e-76 289.3 373 45.6
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 3.5e-67 260.0 342 43.3
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 1.4e-60 238.0 234 52.6
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 6.5e-53 212.6 258 46.5
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 4.8e-48 196.4 149 67.1
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 5.9e-46 189.5 197 51.3
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 8.5e-37 159.1 183 46.4
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 5.7e-33 146.4 97 75.3
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 5.9e-30 136.3 111 69.4
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 5.5e-28 129.8 223 33.2
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 1.0e-26 125.6 59 93.2
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 3.5e-22 110.5 215 31.6
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 3.8e-21 107.1 71 74.6
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 1.5e-20 105.1 177 36.7
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 4.2e-20 103.6 59 76.3
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 2.7e-19 100.9 69 72.5
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.0e-18 97.4 68 70.6


User provided reference genes

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