Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 0.0e+00 1287.7 904 100.0
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 0.0e+00 1143.6 875 94.2
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 8.8e-309 1063.5 899 86.9
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 6.8e-301 1037.3 899 86.1
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 4.6e-265 918.3 907 79.6
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 3.5e-257 892.1 903 79.1
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.1e-253 879.0 909 78.5
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.9e-250 869.8 896 77.6
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.2e-249 867.1 827 83.7
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.6e-249 866.7 874 78.9
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.3e-246 857.1 885 77.9
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 1.1e-245 854.0 914 74.9
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.9e-242 843.2 907 74.4
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.8e-240 836.6 904 72.1
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.1e-239 833.9 892 76.3
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.6e-238 830.1 921 74.0
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 1.1e-234 817.4 915 70.7
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.6e-233 813.5 917 66.5
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 6.0e-233 811.6 890 75.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.5e-231 807.0 905 71.9
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 5.7e-231 805.1 908 69.4
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.4e-229 800.4 852 75.9
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 9.0e-229 797.7 932 70.8
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 9.0e-229 797.7 909 69.2
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.6e-228 796.2 852 78.1
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.2e-227 793.1 900 73.6
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.2e-227 793.1 911 73.5
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 5.1e-224 781.9 903 73.0
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 8.7e-224 781.2 900 69.1
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 3.7e-222 775.8 913 66.9
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.7e-222 775.8 893 71.9
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.4e-221 773.1 912 69.5
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 9.0e-221 771.2 910 72.6
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.5e-220 770.4 910 72.4
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.2e-218 761.5 921 62.2
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 2.7e-217 759.6 972 66.4
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.9e-216 755.7 910 71.9
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.5e-215 753.8 916 70.5
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 3.7e-214 749.2 890 72.4
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.8e-214 748.8 822 70.2
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 6.3e-214 748.4 910 70.2
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.0e-212 743.4 911 70.7
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 5.9e-212 741.9 946 63.6
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.3e-211 740.7 922 70.3
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.7e-211 740.3 907 71.3
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 3.8e-211 739.2 852 72.5
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 8.5e-211 738.0 911 70.0
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.4e-210 737.3 910 66.2
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.2e-210 735.7 900 64.0
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 5.5e-210 735.3 912 71.1
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.0e-208 731.1 906 71.5
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 3.9e-208 729.2 822 65.6
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 5.2e-208 728.8 890 71.0
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.1e-207 727.6 912 69.5
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.6e-207 726.5 895 70.9
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 7.4e-207 724.9 913 70.2
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 9.7e-207 724.5 909 70.3
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 9.7e-207 724.5 890 71.3
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.7e-206 722.6 891 71.5
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 4.1e-205 719.2 813 72.2
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.0e-204 716.8 822 70.8
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 3.5e-204 716.1 901 69.9
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 3.5e-204 716.1 890 70.3
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 7.7e-204 714.9 896 70.8
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 5.0e-203 712.2 810 74.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 8.5e-203 711.4 888 70.2
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 5.5e-202 708.8 813 70.5
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.1e-201 706.8 812 72.0
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.8e-200 703.7 813 69.9
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 4.0e-200 702.6 883 69.1
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 4.0e-200 702.6 813 69.7
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 6.7e-200 701.8 820 73.2
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 5.7e-199 698.7 810 73.0
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 3.7e-198 696.0 896 70.0
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 4.8e-198 695.7 830 69.4
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 6.3e-198 695.3 865 69.1
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 8.2e-198 694.9 815 72.8
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 8.2e-198 694.9 900 69.4
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.0e-195 688.0 912 68.0
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.0e-195 688.0 853 72.1
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.3e-195 687.6 857 69.9
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 6.5e-195 685.3 813 69.5
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 3.2e-194 682.9 904 67.7
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 6.1e-193 678.7 889 69.1
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.4e-192 677.6 869 67.7
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 3.0e-192 676.4 887 66.9
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.3e-190 671.0 778 71.0
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.7e-190 670.6 808 72.6
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 2.8e-190 669.8 910 62.5
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 3.1e-189 666.4 791 69.9
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 2.7e-188 663.3 908 63.3
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 4.5e-188 662.5 768 71.5
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 5.9e-188 662.1 812 71.4
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 2.9e-187 659.8 879 61.1
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 8.5e-187 658.3 885 66.4
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 5.5e-186 655.6 839 64.5
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 7.2e-186 655.2 752 72.5
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 1.2e-185 654.4 887 66.0
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 2.6e-183 646.7 901 64.8
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 4.4e-183 646.0 790 70.9
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 5.7e-183 645.6 889 65.6
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 9.8e-183 644.8 907 62.5
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.4e-181 640.2 888 65.5
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 5.4e-181 639.0 885 65.4
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.0e-179 634.8 895 59.2
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-179 634.4 885 65.5
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 3.8e-179 632.9 889 65.0
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-178 631.3 885 64.7
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.5e-178 630.9 875 62.7
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.5e-178 630.2 894 64.7
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 2.5e-178 630.2 818 68.8
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 3.3e-178 629.8 890 65.2
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 9.5e-178 628.2 881 65.5
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 2.1e-177 627.1 883 64.9
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 3.0e-176 623.2 879 55.9
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 4.0e-176 622.9 831 67.3
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.2e-175 621.3 887 64.7
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 2.2e-174 617.1 888 64.4
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 8.3e-174 615.1 893 63.0
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 7.0e-173 612.1 806 63.6
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.5e-172 609.8 877 65.1
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 5.9e-172 609.0 915 63.2
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-171 607.8 806 63.4
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-171 607.8 806 63.4
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.7e-171 607.4 751 72.2
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 4.3e-170 602.8 813 70.4
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 1.6e-169 600.9 826 64.2
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 8.0e-169 598.6 809 63.3
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.0e-167 594.0 906 63.4
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 3.7e-166 589.7 860 61.0
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.2e-159 568.2 842 56.9
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.5e-159 567.8 809 57.6
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 4.1e-157 559.7 809 61.1
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 2.1e-156 557.4 834 63.5
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 1.5e-154 551.2 806 61.9
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 2.1e-153 547.4 904 56.5
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.6e-153 546.6 744 63.3
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 4.7e-153 546.2 904 56.7
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.8e-152 542.3 688 68.8
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 2.9e-150 537.0 809 60.1
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 4.6e-148 529.6 691 73.7
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.1e-140 504.2 795 50.9
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 3.5e-140 503.4 722 63.3
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.3e-137 495.0 910 53.0
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.8e-135 486.1 966 51.2
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.3e-126 458.4 803 54.3
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.9e-126 457.2 908 46.3
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.9e-122 444.5 915 55.4
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 7.6e-119 432.6 686 57.4
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 6.5e-118 429.5 920 47.4
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.1e-116 424.5 651 70.4
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 7.9e-108 396.0 647 71.7
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 9.1e-104 382.5 465 54.8
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 2.6e-103 380.9 953 47.8
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 5.5e-101 373.2 746 51.9
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 4.6e-100 370.2 650 60.2
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 3.9e-99 367.1 442 68.6
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 4.4e-98 363.6 408 61.8
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.6e-95 354.4 295 65.4
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 1.4e-91 342.0 601 62.9
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 5.7e-90 336.7 1297 30.5
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 8.5e-86 322.8 471 48.8
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 7.7e-71 273.1 311 78.8
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.5e-63 247.7 272 62.1
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 7.3e-61 240.0 146 82.2
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.1e-48 199.5 119 83.2
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.0e-46 193.0 233 50.2
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 4.1e-40 171.0 88 95.5
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 7.3e-37 160.2 141 56.0
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 6.6e-30 137.1 81 79.0
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-29 136.3 192 44.8
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 3.5e-23 114.8 123 53.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.5e-21 108.6 66 84.8
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.2e-18 99.8 239 70.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.8e-12 77.8 57 63.2
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 4.8e-12 77.8 194 34.0
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 9.3e-08 63.5 164 27.4
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 2.7e-07 62.0 206 25.2


User provided reference genes

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