Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G080800 Phaseolus vulgaris HOM05D004557 ORTHO05D005258 9.3e-293 1009.6 557 100.0
VMungo1309G1176 Vigna mungo HOM05D004557 ORTHO05D005258 2.4e-224 782.3 578 74.0
Glyma.06G198300 Glycine max HOM05D004557 ORTHO05D005258 3.8e-76 290.0 322 46.9
Glyma.20G016400 Glycine max HOM05D004557 ORTHO05D005258 4.2e-75 286.6 438 40.6
Glyma.20G016500 Glycine max HOM05D004557 ORTHO05D005258 1.2e-66 258.5 322 42.5
VMungo1309G0311 Vigna mungo HOM05D004557 ORTHO05D005258 2.7e-66 257.3 558 32.3
Lalb_Chr19g0132651 Lupinus albus HOM05D004557 ORTHO05D005258 1.4e-51 208.4 283 39.2
TPR.G3531 Trifolium pratense HOM05D004557 ORTHO05D005258 6.1e-50 203.0 322 34.8
Psat5g030600 Pisum sativum HOM05D004557 ORTHO05D005258 2.3e-49 201.1 411 34.5
Psat7g051600 Pisum sativum HOM05D004557 ORTHO05D005258 3.0e-49 200.7 286 38.5
Lalb_Chr08g0244871 Lupinus albus HOM05D004557 ORTHO05D005258 6.7e-49 199.5 319 35.4
Medtr3g104830 Medicago truncatula HOM05D004557 ORTHO05D005258 4.3e-48 196.8 342 34.8
arahy.Tifrunner.gnm1.ann1.50HX4L Arachis hypogaea HOM05D004557 ORTHO05D005258 6.3e-47 193.0 344 30.8
arahy.Tifrunner.gnm1.ann1.R4HSFZ Arachis hypogaea HOM05D004557 ORTHO05D005258 8.2e-47 192.6 331 33.2
Glyma.04G054800 Glycine max HOM05D004557 ORTHO05D005258 2.4e-46 191.0 364 36.5
Lj1g0020695 Lotus japonicus HOM05D004557 ORTHO05D005258 1.5e-45 188.3 285 35.1
Ca_15841_v3 Cicer arietinum L. HOM05D002542 ORTHO05D010145 2.5e-43 181.0 291 37.5
MELO3C011480.2 Cucumis melo HOM05D004557 ORTHO05D005258 7.9e-42 176.0 271 37.3
ClCG08G009910 Citrullus lanatus HOM05D004557 ORTHO05D005258 3.9e-41 173.7 271 36.2
CsaV3_6G032010 Cucumis sativus L. HOM05D004557 ORTHO05D005258 3.9e-41 173.7 273 36.6
Medtr3g465110 Medicago truncatula HOM05D004557 ORTHO05D005258 3.3e-40 170.6 326 31.3
Sabra06G0172400 Salix brachista HOM05D004557 ORTHO05D005258 9.7e-40 169.1 271 34.7
CiPaw.09G214400 Carya illinoinensis HOM05D004557 ORTHO05D005258 2.2e-39 167.9 313 33.9
Thecc.03G250200 Theobroma cacao HOM05D004557 ORTHO05D005258 2.2e-39 167.9 279 33.3
Potri.006G223100 Populus trichocarpa HOM05D004557 ORTHO05D005258 4.1e-38 163.7 271 34.3
MD08G1069500 Malus domestica HOM05D004557 ORTHO05D005258 9.1e-38 162.5 337 30.3
Rhsim01G0109000 Rhododendron simsii HOM05D004557 ORTHO05D005258 1.5e-37 161.8 400 28.5
CANSAT21G2041 Cannabis sativa HOM05D004557 ORTHO05D005258 2.0e-37 161.4 283 33.2
Gohir.D08G188200 Gossypium hirsutum HOM05D004557 ORTHO05D005258 2.0e-37 161.4 274 33.9
Dinv29489 Davidia involucrata HOM05D004557 ORTHO05D005258 4.5e-37 160.2 276 33.7
Sed0027657 Sechium edule HOM05D004557 ORTHO05D005258 7.7e-37 159.5 283 35.3
Cpa.g.sc126.43 Carica papaya HOM05D004557 ORTHO05D005258 1.0e-36 159.1 305 30.8
MD15G1052600 Malus domestica HOM05D004557 ORTHO05D005258 1.7e-36 158.3 267 34.1
CiPaw.15G089600 Carya illinoinensis HOM05D004557 ORTHO05D005258 2.9e-36 157.5 302 31.5
CiPaw.15G089700 Carya illinoinensis HOM05D004557 ORTHO05D005258 2.9e-36 157.5 302 31.5
Dinv06254 Davidia involucrata HOM05D004557 ORTHO05D005258 2.9e-36 157.5 402 28.6
Dinv15528 Davidia involucrata HOM05D004557 ORTHO05D005258 2.9e-36 157.5 402 28.6
CiPaw.15G090500 Carya illinoinensis HOM05D004557 ORTHO05D005258 8.5e-36 156.0 307 32.2
CiPaw.15G090600 Carya illinoinensis HOM05D004557 ORTHO05D005258 8.5e-36 156.0 302 31.1
Hma1.2p1_0231F.1_g097480 Hydrangea macrophylla HOM05D004557 ORTHO05D005258 2.5e-35 154.5 267 33.0
HanXRQChr09g0248091 Helianthus annuus HOM05D004557 ORTHO05D005258 4.2e-35 153.7 269 34.6
Cfa018005 Carpinus fangiana HOM05D004557 ORTHO05D005258 5.5e-35 153.3 272 32.7
Gorai.004G198100 Gossypium raimondii HOM05D004557 ORTHO05D005258 7.2e-35 152.9 283 32.9
QL02p000341 Quercus lobata HOM05D004557 ORTHO05D005258 1.6e-34 151.8 274 33.9
CSS0012791 Camellia sinensis var. sinensis HOM05D004557 ORTHO05D005258 4.7e-34 150.2 268 33.6
Prupe.1G406500 Prunus persica HOM05D004557 ORTHO05D005258 6.1e-34 149.8 290 31.7
Nn5g28590 Nelumbo nucifera HOM05D004557 ORTHO05D005258 7.9e-34 149.4 273 32.2
PSO210G7071 Papaver somniferum HOM05D004557 ORTHO05D005258 5.2e-33 146.7 307 32.9
Aqoxy7G01097 Aquilegia oxysepala HOM05D004557 ORTHO05D005258 3.3e-32 144.1 268 31.3
COL.COLO4_37167 Corchorus olitorius HOM05D004557 ORTHO05D005258 1.3e-31 142.1 296 30.1
PSO388G0001 Papaver somniferum HOM05D004557 ORTHO05D005258 2.2e-31 141.4 298 30.2
RcHm_v2.0_Chr7g0228051 Rosa chinensis HOM05D004557 ORTHO05D005258 2.8e-31 141.0 267 33.0
SGA_v2.0_scaffold20G09180 Striga asiatica HOM05D004557 ORTHO05D005258 2.8e-31 141.0 273 29.7
ClCG05G018170 Citrullus lanatus HOM05D004557 ORTHO05D005258 3.7e-31 140.6 269 34.6
Lsat_1_v5_gn_7_60080 Lactuca sativa HOM05D004557 ORTHO05D005258 2.4e-30 137.9 234 33.8
Sed0013662 Sechium edule HOM05D004557 ORTHO05D005258 9.1e-30 136.0 269 30.5
Glyma.20G016100 Glycine max HOM05D004557 ORTHO05D005258 4.5e-29 133.7 213 36.6
FAN04G2671 Fragaria x ananassa HOM05D004557 ORTHO05D005258 5.9e-29 133.3 261 32.6
FAN06G3367 Fragaria x ananassa HOM05D004557 ORTHO05D005258 1.0e-28 132.5 266 32.3
FAN08G0395 Fragaria x ananassa HOM05D004557 ORTHO05D005258 1.7e-28 131.7 258 32.2
FAN13G2684 Fragaria x ananassa HOM05D004557 ORTHO05D005258 2.2e-28 131.3 258 32.6
FAN18G0835 Fragaria x ananassa HOM05D004557 ORTHO05D005258 2.9e-28 131.0 258 32.6
Actinidia25701 Actinidia chinensis HOM05D004557 ORTHO05D005258 3.8e-28 130.6 270 30.4
Manes.03G052300 Manihot esculenta HOM05D004557 ORTHO05D005258 5.0e-28 130.2 157 43.3
FvH4_5g32040 Fragaria vesca HOM05D004557 ORTHO05D005258 1.1e-27 129.0 258 32.2
Atru.chr7.1871 Acer truncatum HOM05D004557 ORTHO05D005258 1.5e-27 128.6 327 32.4
Lj7A235T21 Lonicera japonica HOM05D004557 ORTHO05D005258 1.9e-27 128.3 281 29.5
TAR383G0817 Trochodendron aralioides HOM05D004557 ORTHO05D005258 5.2e-25 120.2 271 31.0
Cc08_g01350 Coffea canephora HOM05D004557 ORTHO05D005258 1.2e-24 119.0 269 29.0
ECA240G2282 Erigeron canadensis HOM05D004557 ORTHO05D005258 1.5e-24 118.6 272 28.3
Nn6g35588 Nelumbo nucifera HOM05D004557 ORTHO05D005258 2.6e-24 117.9 320 25.0
Thhalv10013525m.g Eutrema salsugineum HOM05D004557 ORTHO05D005258 4.4e-24 117.1 269 27.5
A10p22940 Brassica napus HOM05D004557 ORTHO05D005258 5.7e-24 116.7 265 27.9
BraA10t44362Z Brassica rapa HOM05D004557 ORTHO05D005258 5.7e-24 116.7 265 27.9
unitig_26.g8849 Utricularia gibba HOM05D004557 ORTHO05D005258 9.7e-24 115.9 294 27.6
C09p60890 Brassica napus HOM05D004557 ORTHO05D005258 1.7e-23 115.2 262 27.5
BolC9t58932H Brassica oleracea HOM05D004557 ORTHO05D005258 2.2e-23 114.8 262 27.5
Migut.B01423 Erythranthe guttata HOM05D004557 ORTHO05D005258 2.2e-23 114.8 308 26.9
SalBow5G2684 Salvia bowleyana HOM05D004557 ORTHO05D005258 2.8e-23 114.4 289 26.6
THA.LOC104827156 Tarenaya hassleriana HOM05D004557 ORTHO05D005258 4.8e-23 113.6 263 32.3
vmacro20759 Vaccinium macrocarpon HOM05D004557 ORTHO05D005258 2.4e-22 111.3 275 27.6
DCAR_000813 Daucus carota HOM05D004557 ORTHO05D005258 1.2e-21 109.0 268 25.0
TWI34G1499 Tripterygium wilfordii HOM05D004557 ORTHO05D005258 1.6e-21 108.6 131 39.7
HPP92_024782 Vanilla planifolia HOM05D004557 ORTHO05D005258 1.6e-21 108.6 272 25.7
AT5G16100 Arabidopsis thaliana HOM05D004557 ORTHO05D005258 2.0e-21 108.2 273 30.8
DCAR_004389 Daucus carota HOM05D004557 ORTHO05D005258 2.0e-21 108.2 319 33.2
Aa31LG11G13510 Aethionema arabicum HOM05D004557 ORTHO05D005258 2.7e-21 107.8 422 23.5
Eucgr.J00345 Eucalyptus grandis HOM05D004557 ORTHO05D005258 5.9e-21 106.7 237 28.7
Haze_18125 Corylus avellana HOM05D004557 ORTHO05D005258 1.7e-20 105.1 203 30.0
Rhsim09G0050500 Rhododendron simsii HOM05D004557 ORTHO05D005258 2.9e-20 104.4 123 41.5
Eucgr.L01064 Eucalyptus grandis HOM05D004557 ORTHO05D005258 3.8e-20 104.0 237 28.3
DCAR_004388 Daucus carota HOM05D004557 ORTHO05D005258 6.5e-20 103.2 149 36.2
Mapoly0049s0118 Marchantia polymorpha HOM05D004557 ORTHO05D005258 1.1e-19 102.4 264 26.9
Nitab4.5_0004953g0040 Nicotiana tabacum HOM05D002542 ORTHO05D010145 1.1e-19 102.4 290 26.9
SGA_v2.0_scaffold98G29377 Striga asiatica HOM05D004557 ORTHO05D005258 1.5e-19 102.1 293 27.0
CAN.G1245.2 Capsicum annuum HOM05D004557 ORTHO05D005258 2.5e-19 101.3 251 26.3
Carub.0008s1244 Capsella rubella HOM05D004557 ORTHO05D005258 4.2e-19 100.5 267 25.5
SGA_v2.0_scaffold64G21858 Striga asiatica HOM05D000448 ORTHO05D000291 7.2e-19 99.8 112 41.1
Peaxi162Scf00809g00213 Petunia axillaris HOM05D002542 ORTHO05D010145 9.4e-19 99.4 348 21.8
Solyc08g062200.3 Solanum lycopersicum HOM05D002542 ORTHO05D010145 1.2e-18 99.0 253 24.9
Glyma.06G054951 Glycine max HOM05D004557 ORTHO05D005258 8.0e-18 96.3 154 37.7
Sopen08g017790 Solanum pennellii HOM05D004557 ORTHO05D005258 8.0e-18 96.3 252 24.6
CDE05G1912 Ceratophyllum demersum HOM05D004557 ORTHO05D005258 4.0e-17 94.0 238 28.6
Glyma.06G054900 Glycine max HOM05D004557 ORTHO05D005258 4.0e-17 94.0 101 45.5
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 6.8e-17 93.2 306 24.8
AL6G26980 Arabidopsis lyrata HOM05D004557 ORTHO05D005258 8.8e-17 92.8 262 24.8
BcaNung02221 Brassica carinata HOM05D004557 ORTHO05D005258 1.5e-16 92.0 265 24.9
Zm00001eb133740 Zea mays HOM05D004557 ORTHO05D005258 7.5e-16 89.7 262 23.3
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 9.8e-16 89.4 115 35.7
Pp3c24_6460 Physcomitrium patens HOM05D004557 ORTHO05D005258 9.8e-16 89.4 278 24.5
Oeu037989.1 Olea europaea HOM05D004557 ORTHO05D005258 1.3e-15 89.0 116 37.1
A02p03380 Brassica napus HOM05D004557 ORTHO05D005258 4.8e-15 87.0 322 23.9
CsaV3_4G035930 Cucumis sativus L. HOM05D004557 ORTHO05D005258 6.3e-15 86.7 184 34.2
BraA02t05309Z Brassica rapa HOM05D004557 ORTHO05D005258 1.1e-14 85.9 322 24.2
PGSC0003DMG400021751 Solanum tuberosum HOM05D004557 ORTHO05D005258 1.4e-14 85.5 253 23.3
Gohir.D08G268633 Gossypium hirsutum HOM05D004557 ORTHO05D005258 2.7e-13 81.3 104 37.5
AUR62009097 Chenopodium quinoa HOM05D004557 ORTHO05D005258 7.7e-13 79.7 244 25.8
Eucgr.I00413 Eucalyptus grandis HOM05D004557 ORTHO05D005258 2.3e-12 78.2 237 26.2
MELO3C016901.2 Cucumis melo HOM05D004557 ORTHO05D005258 2.9e-12 77.8 96 39.6
Nitab4.5_0007748g0010 Nicotiana tabacum HOM05D002542 ORTHO05D010145 2.9e-12 77.8 253 24.9
BolC2t06737H Brassica oleracea HOM05D004557 ORTHO05D005258 3.8e-12 77.4 323 23.5
BcaC03g18467 Brassica carinata HOM05D004557 ORTHO05D005258 5.0e-12 77.0 270 23.7
C02p08140 Brassica napus HOM05D004557 ORTHO05D005258 5.0e-12 77.0 270 23.7
FAN10G1667 Fragaria x ananassa HOM05D004557 ORTHO05D005258 1.5e-11 75.5 180 27.8
Eucgr.I02597 Eucalyptus grandis HOM05D004557 ORTHO05D005258 3.2e-11 74.3 88 37.5
Thecc.09G060300 Theobroma cacao HOM05D004557 ORTHO05D005258 9.5e-11 72.8 273 23.4
SalBow4G2609 Salvia bowleyana HOM05D004557 ORTHO05D005258 2.1e-10 71.6 89 38.2
SEGI_37362 Sequoiadendron giganteum HOM05D004557 ORTHO05D005258 4.7e-10 70.5 252 23.8
FvH4_7g07010 Fragaria vesca HOM05D004557 ORTHO05D005258 2.3e-09 68.2 87 40.2
CARHR197210 Cardamine hirsuta HOM05D004557 ORTHO05D005258 5.2e-09 67.0 95 35.8
Pp3c20_5720 Physcomitrium patens HOM05D032039 ORTHO05D005258 5.2e-09 67.0 93 34.4
SHI18819 Sapria himalayana HOM05D004557 ORTHO05D001357 8.8e-09 66.2 86 38.4
Mapoly0014s0044 Marchantia polymorpha HOM05D004557 ORTHO05D021300 4.4e-08 63.9 95 37.9
AagrBONN_evm.TU.Sc2ySwM_117.3375 Anthoceros agrestis HOM05D028747 ORTHO05D021300 5.7e-08 63.5 86 41.9
CBR_g4496 Chara braunii HOM05D004557 ORTHO05D005258 5.7e-08 63.5 292 24.3
Sp6g28040 Schrenkiella parvula HOM05D004557 ORTHO05D005258 1.7e-07 62.0 101 27.7
Carub.0006s1429 Capsella rubella HOM05D004557 ORTHO05D005258 6.3e-07 60.1 133 25.6
Carub.0055s0004 Capsella rubella HOM05D004557 ORTHO05D005258 6.3e-07 60.1 133 25.6
CARHR197200 Cardamine hirsuta HOM05D004557 ORTHO05D005258 1.1e-06 59.3 99 31.3
Thhalv10009656m.g Eutrema salsugineum HOM05D004557 ORTHO05D005258 1.1e-06 59.3 80 35.0
FAN01G3115 Fragaria x ananassa HOM05D018527 ORTHO05D005258 1.1e-06 59.3 270 23.3
Actinidia29314 Actinidia chinensis HOM05D004557 ORTHO05D005258 1.4e-06 58.9 64 43.8
Pp3c15_9360 Physcomitrium patens HOM05D001516 ORTHO05D021300 1.4e-06 58.9 86 38.4
CsaV3_4G035940 Cucumis sativus L. HOM05D004557 ORTHO05D005258 4.1e-06 57.4 46 50.0
FAN10G3179 Fragaria x ananassa HOM05D018527 ORTHO05D005258 4.1e-06 57.4 93 30.1
Oeu037990.1 Olea europaea HOM05D004557 ORTHO05D005258 5.4e-06 57.0 87 36.8


User provided reference genes

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