Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 9.3e-87 323.6 168 100.0
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 9.0e-66 253.8 142 92.3
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.2e-62 243.4 140 90.0
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 2.7e-54 215.7 140 82.9
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.5e-52 209.9 140 82.9
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 7.0e-34 147.9 116 66.4
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 9.1e-34 147.5 129 62.0
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 5.9e-33 144.8 108 69.4
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 5.9e-33 144.8 108 69.4
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 2.9e-32 142.5 107 71.0
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 2.5e-31 139.4 107 68.2
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 1.3e-27 127.1 106 63.2
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 7.0e-26 121.3 121 57.0
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 1.0e-21 107.5 106 58.5
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 2.0e-20 103.2 101 49.5
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 2.6e-20 102.8 112 52.7
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 3.4e-20 102.4 100 53.0
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 3.4e-20 102.4 123 50.4
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 4.4e-20 102.1 131 48.1
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.4e-20 102.1 117 47.9
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 5.7e-20 101.7 112 50.0
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 7.5e-20 101.3 86 60.5
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 9.8e-20 100.9 88 56.8
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.3e-19 100.5 86 60.5
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 1.3e-19 100.5 89 55.1
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 1.3e-19 100.5 108 50.9
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 2.2e-19 99.8 112 49.1
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.2e-19 99.8 119 47.9
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 2.8e-19 99.4 124 43.5
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 2.8e-19 99.4 140 45.0
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 2.8e-19 99.4 122 46.7
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 3.7e-19 99.0 125 48.0
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 3.7e-19 99.0 125 48.0
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 3.7e-19 99.0 143 46.9
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 4.9e-19 98.6 113 47.8
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 4.9e-19 98.6 104 51.9
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 6.3e-19 98.2 122 45.9
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 6.3e-19 98.2 108 49.1
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 6.3e-19 98.2 82 58.5
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 6.3e-19 98.2 113 50.4
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 1.1e-18 97.4 113 47.8
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 1.1e-18 97.4 139 45.3
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.1e-18 97.4 88 54.5
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 1.4e-18 97.1 114 50.9
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 1.4e-18 97.1 93 57.0
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 1.4e-18 97.1 159 37.1
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 1.8e-18 96.7 123 47.2
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 1.8e-18 96.7 111 47.7
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 2.4e-18 96.3 136 46.3
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 3.1e-18 95.9 112 46.4
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 4.1e-18 95.5 112 48.2
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 4.1e-18 95.5 112 48.2
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 5.4e-18 95.1 168 41.7
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 7.0e-18 94.7 148 45.3
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 7.0e-18 94.7 113 46.0
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 9.2e-18 94.4 102 51.0
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 9.2e-18 94.4 137 44.5
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 1.6e-17 93.6 112 47.3
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 2.0e-17 93.2 105 51.4
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 2.0e-17 93.2 123 45.5
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 2.0e-17 93.2 110 46.4
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 2.0e-17 93.2 154 39.0
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 2.7e-17 92.8 118 49.2
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.7e-17 92.8 121 44.6
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 2.7e-17 92.8 147 40.1
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 2.7e-17 92.8 108 48.1
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 3.5e-17 92.4 112 46.4
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 3.5e-17 92.4 122 44.3
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 7.7e-17 91.3 115 44.3
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 7.7e-17 91.3 111 45.0
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 1.0e-16 90.9 105 46.7
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 1.3e-16 90.5 127 42.5
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 1.3e-16 90.5 132 43.2
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 1.7e-16 90.1 110 50.0
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 2.3e-16 89.7 112 48.2
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 2.9e-16 89.4 171 39.2
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 3.8e-16 89.0 113 47.8
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 5.0e-16 88.6 67 61.2
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 5.0e-16 88.6 114 40.4
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 5.0e-16 88.6 142 40.1
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 6.6e-16 88.2 101 46.5
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 8.6e-16 87.8 116 39.7
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.1e-15 87.4 77 58.4
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 1.1e-15 87.4 121 43.0
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.5e-15 87.0 100 49.0
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 1.9e-15 86.7 78 57.7
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 2.5e-15 86.3 89 51.7
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 2.5e-15 86.3 89 51.7
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 2.5e-15 86.3 89 51.7
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 2.5e-15 86.3 105 45.7
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 4.3e-15 85.5 140 42.1
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 4.3e-15 85.5 96 47.9
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 5.6e-15 85.1 124 44.4
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 5.6e-15 85.1 84 53.6
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-14 84.0 96 46.9
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-14 84.0 96 46.9
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 1.6e-14 83.6 173 34.1
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 1.6e-14 83.6 96 46.9
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.6e-14 83.6 96 46.9
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.1e-14 83.2 96 45.8
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 2.8e-14 82.8 110 42.7
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 2.8e-14 82.8 98 48.0
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 3.6e-14 82.4 96 46.9
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 3.6e-14 82.4 96 46.9
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 8.0e-14 81.3 140 40.0
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 8.0e-14 81.3 94 50.0
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 2.3e-13 79.7 121 44.6
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 3.0e-13 79.3 98 41.8
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 5.2e-13 78.6 144 38.2
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.2e-12 77.4 94 43.6
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 1.5e-12 77.0 99 43.4
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 3.7e-11 72.4 102 43.1
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 1.1e-10 70.9 121 38.8
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 3.0e-08 62.8 91 46.2
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 3.9e-08 62.4 104 34.6
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 3.3e-07 59.3 41 63.4
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 3.3e-07 59.3 116 36.2
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 9.5e-07 57.8 95 40.0
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 6.2e-06 55.1 145 31.7


User provided reference genes

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