Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.7e-280 968.0 484 100.0
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 4.1e-260 901.0 485 93.0
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 9.7e-246 853.2 494 88.7
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 9.2e-188 660.6 512 71.1
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.1e-187 659.4 510 70.8
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 1.6e-176 623.2 492 69.9
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.7e-173 613.2 502 67.3
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.9e-172 609.8 491 70.1
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 3.0e-170 602.4 482 66.6
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.1e-169 600.5 494 66.4
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 2.5e-169 599.4 500 66.0
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 7.6e-166 587.8 484 65.5
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.9e-161 573.2 487 61.8
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 7.6e-158 561.2 485 60.6
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 8.4e-157 557.8 482 60.8
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.4e-156 557.0 485 61.4
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.4e-156 556.2 482 60.6
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.2e-155 553.9 486 60.9
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 7.9e-155 551.2 482 60.6
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 9.6e-153 544.3 489 62.0
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 3.4e-150 535.8 486 61.1
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 4.5e-150 535.4 502 58.6
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 7.6e-150 534.6 503 60.6
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.1e-148 528.1 485 60.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 3.5e-147 525.8 482 58.3
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 6.0e-147 525.0 483 59.0
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 2.8e-144 516.2 480 59.2
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.4e-142 509.2 486 57.8
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 6.5e-141 505.0 486 56.8
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 2.5e-140 503.1 468 58.3
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 4.6e-139 498.8 480 57.3
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 6.1e-139 498.4 492 56.5
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 1.4e-138 497.3 486 56.4
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 4.3e-137 492.3 480 56.7
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 7.4e-137 491.5 489 56.2
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 4.8e-136 488.8 434 60.8
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 8.2e-136 488.0 469 58.2
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.2e-132 475.7 490 53.3
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 3.6e-131 472.6 503 55.1
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.7e-131 472.2 352 71.3
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.8e-130 470.3 493 53.5
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.8e-130 470.3 488 53.7
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 2.3e-130 469.9 387 64.9
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 7.4e-129 464.9 499 53.9
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 1.3e-128 464.2 481 54.5
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 3.7e-128 462.6 473 56.7
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 8.2e-128 461.5 497 53.3
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.4e-127 460.7 500 51.0
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 3.1e-127 459.5 494 55.1
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 4.1e-127 459.1 491 52.5
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 7.0e-127 458.4 494 54.0
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.4e-126 456.1 498 54.0
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 5.9e-126 455.3 489 52.1
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 5.9e-126 455.3 483 51.1
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.0e-125 454.5 494 53.0
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.7e-125 453.8 497 54.1
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.9e-125 453.0 498 53.6
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 5.0e-125 452.2 479 54.3
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 8.5e-125 451.4 498 51.8
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.1e-124 451.1 494 52.6
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.9e-124 450.3 497 54.1
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.2e-124 449.5 499 54.3
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 6.1e-123 445.3 485 50.7
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.4e-122 444.1 484 52.5
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.7e-122 441.8 407 58.7
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.8e-122 441.4 407 58.5
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.6e-118 430.6 457 54.5
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 8.5e-117 424.9 447 54.4
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.5e-116 423.3 490 50.0
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 6.1e-115 418.7 482 50.4
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.0e-114 417.9 480 51.7
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 4.0e-114 416.0 474 50.8
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.5e-113 414.1 473 51.0
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 4.8e-112 409.1 489 47.4
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 8.2e-112 408.3 479 50.1
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.4e-111 407.5 460 49.1
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 1.4e-111 407.5 502 49.6
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 9.1e-111 404.8 496 48.8
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.6e-110 404.1 467 50.3
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 1.6e-110 404.1 438 52.5
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.3e-109 401.0 486 48.1
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.9e-109 399.8 486 46.1
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 5.5e-108 395.6 300 68.7
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 5.5e-108 395.6 390 55.6
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 9.4e-108 394.8 488 47.7
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.2e-107 394.4 439 50.3
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.6e-107 394.0 400 53.2
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 3.6e-107 392.9 484 48.8
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 4.7e-107 392.5 408 52.9
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.0e-105 387.1 483 47.6
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.4e-105 386.0 447 51.0
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.4e-103 380.9 440 49.5
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.4e-103 380.9 413 51.8
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 7.0e-103 378.6 394 53.0
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.2e-102 377.9 492 45.3
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.7e-101 374.0 492 45.7
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 2.9e-101 373.2 507 43.0
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 3.8e-101 372.9 473 47.1
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 2.5e-100 370.2 420 51.0
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 7.5e-97 358.6 498 42.4
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 8.3e-96 355.1 387 49.9
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 7.8e-94 348.6 432 47.7
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.3e-93 347.8 502 42.8
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.3e-93 347.8 409 48.9
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.9e-93 346.7 484 43.4
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 5.0e-93 345.9 400 49.0
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 6.6e-93 345.5 512 42.2
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 8.6e-93 345.1 237 74.3
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 4.7e-91 339.3 499 41.5
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.7e-88 329.7 507 41.2
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 4.9e-88 329.3 498 42.0
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.2e-86 324.7 357 54.6
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 2.3e-85 320.5 505 40.4
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 2.3e-85 320.5 200 75.0
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 3.0e-85 320.1 499 41.1
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.5e-84 317.8 488 42.2
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.1e-83 313.9 393 48.6
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 3.1e-82 310.1 202 74.8
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 1.3e-80 304.7 490 38.8
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 5.6e-76 289.3 391 43.7
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 7.3e-76 288.9 404 45.5
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.4e-74 284.6 498 38.8
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.4e-72 275.8 344 43.3
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 8.3e-72 275.4 417 38.4
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.3e-69 268.1 391 43.0
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.2e-67 261.5 477 38.4
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.6e-67 261.2 477 38.6
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 3.6e-67 260.0 426 37.6
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.4e-66 258.1 161 76.4
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-64 251.1 518 34.0
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 4.2e-63 246.5 197 62.4
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 9.2e-63 245.4 424 38.7
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.7e-61 241.1 441 36.1
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.5e-60 237.3 518 32.8
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.1e-58 231.9 478 34.5
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.5e-57 228.0 174 65.5
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.5e-57 228.0 174 65.5
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.6e-54 216.5 510 34.7
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.1e-50 205.3 424 36.8
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.2e-49 201.8 434 33.6
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 8.4e-48 195.7 109 80.7
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 1.9e-44 184.5 107 83.2
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 6.2e-43 179.5 177 52.5
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.8e-42 177.9 168 53.6
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.3e-42 176.4 444 31.1
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.2e-41 175.3 168 52.4
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.2e-40 171.0 335 37.3
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.0e-37 162.2 162 47.5
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 5.1e-37 159.8 310 37.7
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.3e-36 157.1 268 41.0
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 4.3e-36 156.8 428 31.1
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 5.6e-36 156.4 335 33.1
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.4e-34 151.8 151 51.7
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.4e-18 98.6 260 30.0
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 5.7e-12 76.6 138 37.7


User provided reference genes

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