Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 8.6e-168 593.6 301 100.0
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 1.5e-135 486.5 296 85.1
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 4.0e-125 451.8 305 77.0
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.6e-121 439.9 289 78.5
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 7.9e-121 437.6 308 75.0
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 1.9e-119 433.0 290 77.6
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 1.6e-118 429.9 303 73.9
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 2.6e-116 422.5 306 71.6
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 1.1e-111 407.1 230 88.7
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 7.7e-108 394.4 286 73.1
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 8.8e-104 380.9 298 68.1
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 1.3e-102 377.1 300 65.0
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 1.3e-102 377.1 300 65.0
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 1.3e-102 377.1 298 68.1
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 2.2e-102 376.3 295 67.8
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 4.8e-102 375.2 300 67.3
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 6.3e-102 374.8 298 66.4
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 5.3e-101 371.7 299 67.6
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 9.1e-101 370.9 288 68.4
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 2.0e-100 369.8 300 65.7
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 4.5e-100 368.6 280 68.9
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 7.7e-100 367.9 268 75.0
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.0e-99 367.5 308 66.2
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 1.7e-99 366.7 303 64.4
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 2.2e-99 366.3 299 64.5
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 2.9e-99 365.9 296 64.9
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 5.0e-99 365.2 306 62.7
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 1.4e-98 363.6 255 72.9
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 2.5e-98 362.8 303 64.4
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 5.5e-98 361.7 296 64.2
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 7.2e-98 361.3 295 66.1
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 7.2e-98 361.3 297 64.6
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 7.2e-98 361.3 299 64.5
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 2.1e-97 359.8 307 63.2
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 2.7e-97 359.4 301 64.5
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.6e-97 359.0 296 64.5
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 6.1e-97 358.2 277 65.3
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 1.8e-96 356.7 308 62.0
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 2.3e-96 356.3 308 62.7
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 6.7e-96 354.8 286 67.5
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 8.8e-96 354.4 310 63.2
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 8.8e-96 354.4 298 62.8
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 1.1e-95 354.0 295 62.4
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 1.1e-95 354.0 303 63.4
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 3.3e-95 352.4 282 67.4
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 7.0e-93 344.7 262 63.4
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 9.1e-93 344.4 252 69.0
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 1.6e-92 343.6 262 63.4
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 5.9e-92 341.7 303 57.8
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 7.7e-92 341.3 248 69.0
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 7.7e-92 341.3 262 66.0
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 1.3e-91 340.5 297 58.9
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 1.7e-91 340.1 248 66.1
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 2.2e-91 339.7 255 65.1
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.9e-91 339.3 231 70.6
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 3.8e-91 339.0 294 63.3
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 5.0e-91 338.6 255 66.7
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 8.5e-91 337.8 231 71.0
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 3.2e-90 335.9 292 59.2
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 3.2e-90 335.9 304 57.9
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 5.5e-90 335.1 258 64.3
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 5.5e-90 335.1 295 59.7
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 7.2e-90 334.7 301 58.8
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.6e-89 333.6 246 66.3
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 2.1e-89 333.2 258 64.3
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.1e-89 333.2 290 60.7
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 2.7e-89 332.8 334 56.0
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.7e-89 332.8 246 66.3
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 4.7e-89 332.0 295 61.0
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 6.1e-89 331.6 295 59.0
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 1.0e-88 330.9 287 60.3
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 6.7e-88 328.2 261 62.8
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 6.7e-88 328.2 286 63.3
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 5.7e-87 325.1 303 57.4
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 2.8e-86 322.8 257 62.3
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 2.8e-86 322.8 257 62.3
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 2.8e-86 322.8 303 58.4
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 4.8e-86 322.0 295 58.6
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 4.8e-86 322.0 264 64.8
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 6.3e-86 321.6 293 57.3
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 8.2e-86 321.2 290 57.9
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 8.2e-86 321.2 238 66.0
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.1e-85 320.9 268 66.4
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 1.4e-85 320.5 264 62.1
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 1.4e-85 320.5 242 63.2
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.2e-84 317.4 376 52.9
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 4.5e-84 315.5 298 57.0
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 7.7e-84 314.7 307 55.7
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 7.7e-84 314.7 261 61.3
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 2.2e-83 313.2 291 58.1
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 2.9e-83 312.8 265 62.6
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.5e-82 310.5 343 52.2
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.9e-82 310.1 227 65.2
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 8.8e-80 301.2 422 45.5
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 2.6e-79 299.7 253 60.5
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 5.4e-77 292.0 335 50.1
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 5.7e-71 271.9 286 49.0
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 2.2e-70 270.0 324 51.9
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 8.3e-70 268.1 241 59.3
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.8e-69 266.9 187 70.1
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 1.8e-69 266.9 272 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 1.6e-68 263.8 273 50.9
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 2.7e-68 263.1 236 54.7
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 8.6e-67 258.1 190 66.3
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 1.5e-63 247.3 293 50.9
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 9.8e-63 244.6 248 52.8
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 1.9e-61 240.4 196 59.2
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 1.2e-60 237.7 261 47.1
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 5.0e-59 232.3 166 71.1
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 1.1e-58 231.1 185 63.8
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 3.6e-57 226.1 269 49.8
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 7.5e-55 218.4 269 43.5
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.3e-51 207.6 281 44.8
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.2e-49 201.1 202 55.0
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.2e-49 201.1 305 42.3
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 8.9e-48 194.9 199 54.3
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 2.9e-46 189.9 140 65.0
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 4.9e-46 189.1 247 42.1
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 4.6e-36 156.0 119 62.2
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 1.1e-34 151.4 202 42.1
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 2.3e-27 127.1 162 43.8
VMungo1309G1169 Vigna mungo HOM05D000561 ORTHO05D432855 1.6e-17 94.4 83 67.5
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 2.1e-17 94.0 79 57.0
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.5e-15 87.8 76 52.6


User provided reference genes

Program Settings